PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy010762
Organism
Arachis hypogaea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ARF
Protein Properties Length: 776aa    MW: 86070.2 Da    PI: 8.249
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S59551912PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.53.9e-2173174199
                EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ ++W++++iyr+++++++lt+ W+ Fv+ ++L +gD+v+F   ++++++l++
  Ahy010762  73 FCKQLTASDTSTHGGFSVPRRAAEKIfppldySMQPPA-QELVARDLHDNVWTFRHIYRGQPKHHMLTTEWSLFVSRKKLFAGDSVLFI--RDEKQQLLL 169
                99*****************************9545444.38************************************************..5688889** PP

                EEE-S CS
         B3  95 kvfrk 99 
                +++r+
  Ahy010762 170 GIRRA 174
                **997 PP
2Auxin_resp123.31.7e-40199282183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+++s+F+v+YnPras+seFv++++k+ ka++ +++s+GmRf+m+feteds +rr++Gt++g+sdldpvrW+nS+Wr+L+
   Ahy010762 199 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVYsHQISPGMRFRMMFETEDSGTRRYMGTITGISDLDPVRWKNSQWRNLQ 282
                 79********************************9989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.7E-4163202IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.8E-3965188IPR015300DNA-binding pseudobarrel domain
CDDcd100175.23E-1772164No hitNo description
PROSITE profilePS5086310.43373175IPR003340B3 DNA binding domain
SMARTSM010193.1E-2273175IPR003340B3 DNA binding domain
PfamPF023623.2E-1973174IPR003340B3 DNA binding domain
PfamPF065072.2E-35199282IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 776 aa     Download sequence    Send to blast
MFLKKDVDGQ ISNYPNLPSK LLCLLHNVTL HADPETDEVY AQMTLQPVPS YDKEALLRSD  60
LALKSNKAQP EFFCKQLTAS DTSTHGGFSV PRRAAEKIFP PLDYSMQPPA QELVARDLHD  120
NVWTFRHIYR GQPKHHMLTT EWSLFVSRKK LFAGDSVLFI RDEKQQLLLG IRRANRQPAN  180
ISSSVLSSDS MHIGILAAAA HAAANNSPFT VFYNPRASPS EFVIPLAKYY KAVYSHQISP  240
GMRFRMMFET EDSGTRRYMG TITGISDLDP VRWKNSQWRN LQVGWDESTA GEKRSRVSLW  300
EIEPVTAPFF ICPPPFFRAK RPRQPGMPDD DPSDFDNLFK RTMPWLGDDM CMKDPQGLPG  360
MSLVQWMNMQ QNPSLANSMQ PNYVPSLPGS VLQNLPGADI SRQLGFSSSQ IPQPNNVAFN  420
TQRLLQTAQQ LDHLQKLPSA SVNLGTVMQP QQQLGDISQQ SRQSLGSQTL PQSQVQAQIL  480
HPQNLVQTNN ILQQQQSSIQ NHQFNRSVPQ NPPQQQQQQQ TIMGQNQQQT MVPSTIPDHV  540
QQLQMSDNQI QLQLLQKLQQ QQQTLLVQQS ALQQPSQLAQ IQDQQRQLLD AAQSFSRLVP  600
PGQVLEIPPV HQNSLPESNA ITNQMTKANG RSNIHISHLP QQPKPQQQSG LLPEMSGQMA  660
LPPTPSPNQL SAAGSGILNG AAVAGQSVIT DDVPSCSTSP STNNSASAVP LLINSQLHRS  720
SITADDMAQS TATLLSSGAL ETMSSGANMV KDLQPKSEVK PSLNISKNQN QGSLVH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-146430389388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025656247.10.0auxin response factor 19 isoform X2
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A444YZC10.0A0A444YZC1_ARAHY; Auxin response factor
STRINGXP_007152995.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19