PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy010908

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

MIKC_MADS

Protein Properties

Length: 258aa MW: 29417 Da PI: 9.8213

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S58470855	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.2	1.7e-31	28	77	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+ Ahy010908 28 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 77 79***********************************************8 PP
2	K-box	113.5	2.1e-37	99	192	8	100
K-box 8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++e +a+++qqe++kL+++i+nLq+++R++lGe+L+s+++++L++Le +Lek+++kiRskKnell+++ie++qk+e +l+++n+ Lr+k++e Ahy010908 99 GsASEINAQYYQQEAEKLRAQISNLQNNNRQILGESLSSMNVRDLKNLEGKLEKGISKIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAE 192 3488999************************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	34.132	20	80	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.1E-42	20	79	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.14E-33	21	92	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.67E-44	21	90	No hit	No description
PROSITE pattern	PS00350	0	22	76	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.0E-33	22	42	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.9E-27	29	76	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.0E-33	42	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.0E-33	57	78	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	1.6E-27	105	190	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	15.093	106	196	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MAFPGANESM SGASSPQRKM GRGKIEIKRI ENTTNRQVTF CKRRNGLLKK AYELSVLCDA 60 EVALIVFSSR GRLYEYANNS VKATIDRYKK ACSDSSGAGS ASEINAQYYQ QEAEKLRAQI 120 SNLQNNNRQI LGESLSSMNV RDLKNLEGKL EKGISKIRSK KNELLFAEIE YMQKREIDLH 180 NNNQLLRAKI AESERNNMSV LPTAGPTNYE SMHQSHEQHQ HQHQHQQQQF DSRGYFQVTG 240 LQPNSQYARQ DQMSLQLV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	4e-21	20	88	1	69	Myocyte-specific enhancer factor 2B
1tqe_Q	4e-21	20	88	1	69	Myocyte-specific enhancer factor 2B
1tqe_R	4e-21	20	88	1	69	Myocyte-specific enhancer factor 2B
1tqe_S	4e-21	20	88	1	69	Myocyte-specific enhancer factor 2B
5f28_A	4e-21	20	88	1	69	MEF2C
5f28_B	4e-21	20	88	1	69	MEF2C
5f28_C	4e-21	20	88	1	69	MEF2C
5f28_D	4e-21	20	88	1	69	MEF2C
6byy_A	5e-21	20	88	1	69	MEF2 CHIMERA
6byy_B	5e-21	20	88	1	69	MEF2 CHIMERA
6byy_C	5e-21	20	88	1	69	MEF2 CHIMERA
6byy_D	5e-21	20	88	1	69	MEF2 CHIMERA
6c9l_A	4e-21	20	88	1	69	Myocyte-specific enhancer factor 2B
6c9l_B	4e-21	20	88	1	69	Myocyte-specific enhancer factor 2B
6c9l_C	4e-21	20	88	1	69	Myocyte-specific enhancer factor 2B
6c9l_D	4e-21	20	88	1	69	Myocyte-specific enhancer factor 2B
6c9l_E	4e-21	20	88	1	69	Myocyte-specific enhancer factor 2B
6c9l_F	4e-21	20	88	1	69	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020969102.1	0.0	floral homeotic protein AGAMOUS
Refseq	XP_025683569.1	0.0	floral homeotic protein AGAMOUS isoform X1
Refseq	XP_025683570.1	0.0	floral homeotic protein AGAMOUS isoform X2
Swissprot	Q43585	1e-128	AG_TOBAC; Floral homeotic protein AGAMOUS
TrEMBL	A0A445BC77	0.0	A0A445BC77_ARAHY; Uncharacterized protein
STRING	XP_004485952.1	1e-142	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18960.1	1e-116	MIKC_MADS family protein

Publications ? help Back to Top
Cheung AY,Zhan XY,Wang H,Wu HM Organ-specific and Agamous-regulated expression and glycosylation of a pollen tube growth-promoting protein. Proc. Natl. Acad. Sci. U.S.A., 1996. 93(9): p. 3853-8 [PMID:8632979]