PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy011119
Organism
Arachis hypogaea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NF-YC
Protein Properties Length: 240aa    MW: 27471.8 Da    PI: 6.6773
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S59542203PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC164.91.1e-51581592100
      NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 
                l++fw +q   ie+a+df+ h+lPlarikki+kade+vkmisaeaP+++skace+fi+elt+r+w++aeenkrrtl+k+diaaavt+td+fdflvd+vpr
  Ahy011119  58 LHNFWDNQyreIEQAADFRIHSLPLARIKKIMKADENVKMISAEAPIIFSKACEMFIMELTMRAWNNAEENKRRTLQKNDIAAAVTKTDVFDFLVDVVPR 157
                899****99999**************************************************************************************** PP

      NF-YC  99 de 100
                de
  Ahy011119 158 DE 159
                97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.95E-3144151IPR009072Histone-fold
PfamPF008085.1E-2179142IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.8E-3780157IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MDKKESDQSA TRGTSTPSHT KVVAGPSVPS PLLRDHQHSH HYIHYHHLQQ EEEFHQKLHN  60
FWDNQYREIE QAADFRIHSL PLARIKKIMK ADENVKMISA EAPIIFSKAC EMFIMELTMR  120
AWNNAEENKR RTLQKNDIAA AVTKTDVFDF LVDVVPRDET VDLGLYAGIR RGGGNNNIVP  180
CYYYVPPQHV MGPPPYGPPR VPMVGRHVPN QDNINEQQNS ENTTHAMCPK EQNHSSDSDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-5164157295NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129135RRTLQKN
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025693833.10.0nuclear transcription factor Y subunit C-2-like
RefseqXP_025693834.10.0nuclear transcription factor Y subunit C-2-like
RefseqXP_025693841.10.0nuclear transcription factor Y subunit C-2-like
RefseqXP_025693842.10.0nuclear transcription factor Y subunit C-2-like
SwissprotQ8LCG72e-56NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLA0A445DJT40.0A0A445DJT4_ARAHY; Uncharacterized protein
STRINGXP_010094005.15e-63(Morus notabilis)
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li S, et al.
    HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis.
    Plant Cell, 2014. 26(4): p. 1764-1780
    [PMID:24728648]
  3. Mei X, et al.
    Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm.
    Mol. Genet. Genomics, 2015. 290(5): p. 1819-31
    [PMID:25851237]
  4. Baud S, et al.
    Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed.
    Plant Physiol., 2016. 171(2): p. 1099-112
    [PMID:27208266]
  5. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]