PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy011143
Organism
Arachis hypogaea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 208aa    MW: 24137.1 Da    PI: 9.3685
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S54170035PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.12.3e-09128170346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rWT+eE ++l d+++q+  + +  Ia +++  Rtl+++k+r+++
        Ahy011143 128 RWTKEETDQLFDLFEQFDLR-FIVIADRFPSSRTLEELKDRYYS 170
                      9*******************.*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF162821.4E-30101175IPR032563DAMP1, SANT/Myb-like domain
SuperFamilySSF466892.37E-7125175IPR009057Homeodomain-like
SMARTSM007171.1E-7125174IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-7127173IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MDAKDILGLP KNSFPPQEKK SRPPKESQRK PDGISREVYA LTGGLAPLMP AVDSSQLKRR  60
PPPDEKVAWQ WLGFTSSARK DNLHLYHWVR VVNGVPPTGD YSFAKYNKSV DITRYTDEEY  120
EKYLTDPRWT KEETDQLFDL FEQFDLRFIV IADRFPSSRT LEELKDRYYS VSRALLIARN  180
PSSVDIAAHP LVKEPYNISR DVERKRAX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3hm5_A2e-20100185493DNA methyltransferase 1-associated protein 1
4iej_A2e-20100185493DNA methyltransferase 1-associated protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025618630.11e-149SWR1-complex protein 4
RefseqXP_025618631.11e-149SWR1-complex protein 4
RefseqXP_025618632.11e-149SWR1-complex protein 4
RefseqXP_025618633.11e-149SWR1-complex protein 4
SwissprotQ8VZL61e-110SWC4_ARATH; SWR1-complex protein 4
TrEMBLA0A444XHY61e-149A0A444XHY6_ARAHY; Uncharacterized protein
TrEMBLA0A445BLU41e-149A0A445BLU4_ARAHY; Uncharacterized protein
STRINGGLYMA19G40630.11e-129(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47210.11e-113MYB_related family protein
Publications ? help Back to Top
  1. Gómez-Zambrano Á, et al.
    Arabidopsis SWC4 Binds DNA and Recruits the SWR1 Complex to Modulate Histone H2A.Z Deposition at Key Regulatory Genes.
    Mol Plant, 2018. 11(6): p. 815-832
    [PMID:29604400]