PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy011268

Common Name

SPL14

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

SBP

Protein Properties

Length: 649aa MW: 71122 Da PI: 8.9212

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S59539627	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.7	1.1e-40	118	195	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvCe hska+++ + +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+q+ Ahy011268 118 MCQVDNCKEDLSSAKDYHRRHKVCELHSKASKAPLGNQMQRFCQQCSRFHPLTEFDEGKRSCRRRLAGHNRRRRKTQP 195 6**************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	4.3E-34	113	180	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.641	116	193	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.7E-37	117	197	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.1E-30	119	192	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 649 aa Download sequence Send to blast
MEKVAPPIFM HQALQSRFCD VPMTTTATTK KRDLSYDVDK SSSNGNWNPN AWSWDSVRFI 60 GKPVPQQNGV VSVEEETLRL NLGSSGVSGS GGSVDPSVSR PSKRVRSASP TGTASYPMCQ 120 VDNCKEDLSS AKDYHRRHKV CELHSKASKA PLGNQMQRFC QQCSRFHPLT EFDEGKRSCR 180 RRLAGHNRRR RKTQPEDVTS QPESVATGNA EIFNLLSAIA SSQGQKPNGK FEDRSKIASQ 240 VPDKDQLVQI LNRIPLPADL AAKLLNVGGK GQIQTSSYHH DKVNQSNSGP LTKDLLAVLS 300 TTLSASTPNS QKSSQSSDSE KSRASADQVG ESLQMRQHPQ EFASVGDERS SGSSQSPVED 360 SDFPEVQVNL PLQLFSSSPE VGNPPKLTPS QKYFSSDSSN PVEERSPSSS PAVDNQFDLQ 420 GVARGLKADG VPSRREVNAN KEASQSQSYN ISLNLFNAPN SRVQPSSLQS VPFQAGYASS 480 GSDHSPPSLN SDAQDRTGRI MFKLFDKDPS HFPGTLRTQI YNWLSNSPSD MESYIRPGCV 540 VLSLYASMSS AAWEQLEENF LQHVHSLIQS NSDFWRIGRF LVHSGNQLAL HKDGKIHLCK 600 PWRTWRSPEL ISVSPLAIVS GQETSFSLKG RNLSNPGTKI HCTGTGGYM

Sequence ? help Back to Top

Protein Sequence Length: 649 aa Download sequence Send to blast

MEKVAPPIFM HQALQSRFCD VPMTTTATTK KRDLSYDVDK SSSNGNWNPN AWSWDSVRFI  60
GKPVPQQNGV VSVEEETLRL NLGSSGVSGS GGSVDPSVSR PSKRVRSASP TGTASYPMCQ  120
VDNCKEDLSS AKDYHRRHKV CELHSKASKA PLGNQMQRFC QQCSRFHPLT EFDEGKRSCR  180
RRLAGHNRRR RKTQPEDVTS QPESVATGNA EIFNLLSAIA SSQGQKPNGK FEDRSKIASQ  240
VPDKDQLVQI LNRIPLPADL AAKLLNVGGK GQIQTSSYHH DKVNQSNSGP LTKDLLAVLS  300
TTLSASTPNS QKSSQSSDSE KSRASADQVG ESLQMRQHPQ EFASVGDERS SGSSQSPVED  360
SDFPEVQVNL PLQLFSSSPE VGNPPKLTPS QKYFSSDSSN PVEERSPSSS PAVDNQFDLQ  420
GVARGLKADG VPSRREVNAN KEASQSQSYN ISLNLFNAPN SRVQPSSLQS VPFQAGYASS  480
GSDHSPPSLN SDAQDRTGRI MFKLFDKDPS HFPGTLRTQI YNWLSNSPSD MESYIRPGCV  540
VLSLYASMSS AAWEQLEENF LQHVHSLIQS NSDFWRIGRF LVHSGNQLAL HKDGKIHLCK  600
PWRTWRSPEL ISVSPLAIVS GQETSFSLKG RNLSNPGTKI HCTGTGGYM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	8e-32	111	192	3	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269\|PubMed:15703061}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025624993.1	0.0	squamosa promoter-binding-like protein 14 isoform X1
Swissprot	Q8RY95	0.0	SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBL	A0A444XAR9	0.0	A0A444XAR9_ARAHY; Uncharacterized protein
STRING	GLYMA20G00900.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	1e-163	squamosa promoter binding protein-like 14

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Liu J, et al. Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.). Front Plant Sci, 2016. 7: p. 21 [PMID:26870051]