PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy011271

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

MYB_related

Protein Properties

Length: 343aa MW: 37335.1 Da PI: 9.8239

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S59545545	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.9	4.7e-13	101	145	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG+g+W+ I+r + Rt+ q+ s+ qky Ahy011271 101 PWTEEEHRMFLVGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKY 145 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.60.10	4.9E-4	3	22	IPR001878	Zinc finger, CCHC-type
PROSITE profile	PS50158	8.515	3	20	IPR001878	Zinc finger, CCHC-type
PROSITE profile	PS51294	19.208	94	150	IPR017930	Myb domain
SuperFamily	SSF46689	3.51E-17	96	151	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.0E-19	97	149	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	1.5E-11	98	144	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-10	98	148	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-10	101	145	IPR001005	SANT/Myb domain
CDD	cd00167	5.80E-9	101	146	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MTRRCSHCSN NGHNSRTCPN RGGGGVKLFG VRLTDGSIIK KSASMGNLMT LHHHCSSPSS 60 SFVAAAGDNP GSPDPVGYLS DDPAHASSFA NRRGERKKGV PWTEEEHRMF LVGLQKLGKG 120 DWRGISRNFV VSRTPTQVAS HAQKYFIRQS NATRRKRRSS LFDMAPDMPT DPPSVLEKQV 180 LLLTSENSQS PNVKSQPSLN LSLKSEVDPM EIASEENVKE NNVANGLKPK AAEYFPTYVP 240 VQFSIWPSLE ASFQESNGVE TSHHEVVKPI PVVPKNPVNV DALVGMSNLS IGNTQMILER 300 EPSPLSLKLL GEPSRQSAFH ANTHAPVGRS DLSSGKNNPI QAV

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MTRRCSHCSN NGHNSRTCPN RGGGGVKLFG VRLTDGSIIK KSASMGNLMT LHHHCSSPSS  60
SFVAAAGDNP GSPDPVGYLS DDPAHASSFA NRRGERKKGV PWTEEEHRMF LVGLQKLGKG  120
DWRGISRNFV VSRTPTQVAS HAQKYFIRQS NATRRKRRSS LFDMAPDMPT DPPSVLEKQV  180
LLLTSENSQS PNVKSQPSLN LSLKSEVDPM EIASEENVKE NNVANGLKPK AAEYFPTYVP  240
VQFSIWPSLE ASFQESNGVE TSHHEVVKPI PVVPKNPVNV DALVGMSNLS IGNTQMILER  300
EPSPLSLKLL GEPSRQSAFH ANTHAPVGRS DLSSGKNNPI QAV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025610197.1	0.0	transcription factor MYBS3
Swissprot	Q7XC57	5e-99	MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBL	A0A445CFI0	0.0	A0A445CFI0_ARAHY; Uncharacterized protein
STRING	AES67930	1e-172	(Medicago truncatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16350.1	2e-93	MYB_related family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Su CF, et al. A novel MYBS3-dependent pathway confers cold tolerance in rice. Plant Physiol., 2010. 153(1): p. 145-58 [PMID:20130099]