PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy011866

Common Name

MYB5

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

MYB

Protein Properties

Length: 182aa MW: 19525.6 Da PI: 6.6824

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S59541298	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.1	1.7e-17	54	99	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v ++G ++W++Iar + gR++k+c++rw + Ahy011866 54 KGPWSPEEDTILSRLVSKFGARNWSLIARGIA-GRSGKSCRLRWCNQ 99 79****************************.*********985 PP
2	Myb_DNA-binding	59.6	7.1e-19	106	150	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T eEd ++v a++ +G++ W++Iar ++ gRt++ +k++w++ Ahy011866 106 RKPFTDEEDRIIVAAHAIHGNK-WAAIARLLP-GRTDNAIKNHWNST 150 789*****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	26.091	49	104	IPR017930	Myb domain
SuperFamily	SSF46689	3.28E-31	51	147	IPR009057	Homeodomain-like
SMART	SM00717	4.8E-15	53	102	IPR001005	SANT/Myb domain
Pfam	PF00249	1.0E-16	54	99	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.3E-26	55	107	IPR009057	Homeodomain-like
CDD	cd00167	2.31E-14	56	98	No hit	No description
SMART	SM00717	2.2E-17	105	153	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	22.171	105	155	IPR017930	Myb domain
Pfam	PF00249	7.1E-16	106	150	IPR001005	SANT/Myb domain
CDD	cd00167	3.16E-13	108	151	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.1E-24	108	154	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MDPPEETATT TLDHEGASTG ADAAADTGSG DEGPTEIAEA GGSGGGGSNR DRVKGPWSPE 60 EDTILSRLVS KFGARNWSLI ARGIAGRSGK SCRLRWCNQL DPAVKRKPFT DEEDRIIVAA 120 HAIHGNKWAA IARLLPGRTD NAIKNHWNST LRRRGVEHDK IKVESSNMVE DVSLDKAKAS 180 SE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-43	51	154	4	107	B-MYB
Search in ModeBase

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by salicylic acid. {ECO:0000269\|PubMed:16463103}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015950110.1	1e-129	transcription factor MYB1
Refseq	XP_025653117.1	1e-129	transcription factor MYB1
Swissprot	Q42575	5e-57	MYB1_ARATH; Transcription factor MYB1
TrEMBL	A0A445EB81	1e-127	A0A445EB81_ARAHY; Uncharacterized protein
STRING	EMJ06514	4e-85	(Prunus persica)

Publications ? help Back to Top
Chen N, et al. Identification of 30 MYB transcription factor genes and analysis of their expression during abiotic stress in peanut (Arachis hypogaea L.). Gene, 2014. 533(1): p. 332-45 [PMID:24013078] Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590] Verma N,Burma PK Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum. Plant J., 2017. 92(3): p. 481-494 [PMID:28849604]