PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy011934

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

MYB_related

Protein Properties

Length: 390aa MW: 41889.9 Da PI: 4.183

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S59537597	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.8	1e-12	130	171	2	45
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 g+WT +E +ll++a +++ + W+ Ia+++g +++ qc++++ Ahy011934 130 GKWTDQETLLLLEALELYKEN-WNEIAEHVG-TKSKAQCILHFV 171 89***************88.*****.********95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57850	4.47E-12	64	129	No hit	No description
SMART	SM00291	3.9E-7	69	113	IPR000433	Zinc finger, ZZ-type
PROSITE profile	PS50135	9.012	69	115	IPR000433	Zinc finger, ZZ-type
Pfam	PF00569	7.7E-10	72	107	IPR000433	Zinc finger, ZZ-type
CDD	cd02336	3.30E-20	73	117	No hit	No description
PROSITE pattern	PS01357	0	75	101	IPR000433	Zinc finger, ZZ-type
SuperFamily	SSF46689	1.5E-13	127	181	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-8	127	170	IPR009057	Homeodomain-like
PROSITE profile	PS51293	22.792	127	178	IPR017884	SANT domain
SMART	SM00717	1.3E-12	128	176	IPR001005	SANT/Myb domain
Pfam	PF00249	9.2E-13	130	172	IPR001005	SANT/Myb domain
CDD	cd00167	3.03E-4	148	173	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MGSADASTSD DGEAERNSLL EKLYYFGMHQ LRPPVVQKAS LMTQATTSGL FPESAIAEEL 60 VKQEGPAVEM LEYHCNSCSA DCSRKRYHCQ KQADFDLCSD CFNNRKFGSG MSSSDFILME 120 PAEVAGVSGG KWTDQETLLL LEALELYKEN WNEIAEHVGT KSKAQCILHF VQMPIEDAFM 180 DCKDDVETSC KETADPAATN NDASANKDAS ECNENNTGDN TEGHGEASKS EEVKAKVDQE 240 IPNQEDGVGE KTCEGTSKSE DADKVKICPE GGNDCALIAL KEAFVAVGYS PEPEGPSSFA 300 EVGNPVMALA AFLARLVGPD VAVASAHTAL KSILGNSPGT ELAARNSFIL GDQPDNKEPT 360 TRDSKNEEGQ DGINAKQDKP ISEDKDLASX

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MGSADASTSD DGEAERNSLL EKLYYFGMHQ LRPPVVQKAS LMTQATTSGL FPESAIAEEL  60
VKQEGPAVEM LEYHCNSCSA DCSRKRYHCQ KQADFDLCSD CFNNRKFGSG MSSSDFILME  120
PAEVAGVSGG KWTDQETLLL LEALELYKEN WNEIAEHVGT KSKAQCILHF VQMPIEDAFM  180
DCKDDVETSC KETADPAATN NDASANKDAS ECNENNTGDN TEGHGEASKS EEVKAKVDQE  240
IPNQEDGVGE KTCEGTSKSE DADKVKICPE GGNDCALIAL KEAFVAVGYS PEPEGPSSFA  300
EVGNPVMALA AFLARLVGPD VAVASAHTAL KSILGNSPGT ELAARNSFIL GDQPDNKEPT  360
TRDSKNEEGQ DGINAKQDKP ISEDKDLASX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2yus_A	6e-11	122	184	10	73	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of a multiprotein complex equivalent of the SWI/SNF complex, an ATP-dependent chromatin-remodeling complex, which is required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016187016.1	0.0	SWI/SNF complex subunit SWI3D
Refseq	XP_016187017.1	0.0	SWI/SNF complex subunit SWI3D
Refseq	XP_025642304.1	0.0	SWI/SNF complex subunit SWI3D
Refseq	XP_025642305.1	0.0	SWI/SNF complex subunit SWI3D
Swissprot	Q8VY05	1e-101	SWI3D_ARATH; SWI/SNF complex subunit SWI3D
TrEMBL	A0A445A8P3	0.0	A0A445A8P3_ARAHY; Uncharacterized protein
STRING	GLYMA11G12640.2	0.0	(Glycine max)

Publications ? help Back to Top
Sarnowski TJ,Swiezewski S,Pawlikowska K,Kaczanowski S,Jerzmanowski A AtSWI3B, an Arabidopsis homolog of SWI3, a core subunit of yeast Swi/Snf chromatin remodeling complex, interacts with FCA, a regulator of flowering time. Nucleic Acids Res., 2002. 30(15): p. 3412-21 [PMID:12140326] Zhou C,Miki B,Wu K CHB2, a member of the SWI3 gene family, is a global regulator in Arabidopsis. Plant Mol. Biol., 2003. 52(6): p. 1125-34 [PMID:14682613] Sarnowski TJ, et al. SWI3 subunits of putative SWI/SNF chromatin-remodeling complexes play distinct roles during Arabidopsis development. Plant Cell, 2005. 17(9): p. 2454-72 [PMID:16055636] Liu ZW, et al. The SET domain proteins SUVH2 and SUVH9 are required for Pol V occupancy at RNA-directed DNA methylation loci. PLoS Genet., 2014. 10(1): p. e1003948 [PMID:24465213] Liu ZW, et al. Two Components of the RNA-Directed DNA Methylation Pathway Associate with MORC6 and Silence Loci Targeted by MORC6 in Arabidopsis. PLoS Genet., 2016. 12(5): p. e1006026 [PMID:27171427]