PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy012104

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

MIKC_MADS

Protein Properties

Length: 170aa MW: 19770.2 Da PI: 10.2335

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S59519975	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	76.4	2.1e-24	2	51	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +ie + rq tfskR+ gi+KKA+ELS+LCda+ a+i+fs++gkl++++s Ahy012104 2 KIEKNASRQATFSKRKRGIFKKAKELSTLCDADLALIVFSPSGKLFDFAS 51 699999*****************************************986 PP
2	K-box	36.4	2.2e-13	70	161	9	97
K-box 9 leeakaeslqqelakLkkeienLq...reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 +++++ + q e + + ++L +Rhl Ge+L+ +++ eLq+Le+ L k+l ++ + K+e l+ i e++k+ ++ ++n++L+++ Ahy012104 70 SQDQQSHEFQLEKDTYYLKCKELTdktIGLRHLNGEELQGMKIHELQKLEKVLGKGLARVSKEKDERNLKDIIEMKKRGLQMVQDNHRLKQM 161 455566666666666666666666544567***********************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	8.3E-24	1	52	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	23.829	1	53	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.9E-24	2	49	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.57E-26	2	79	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-14	15	30	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-14	30	51	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	1.2E-9	76	161	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	8.257	78	168	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
XKIEKNASRQ ATFSKRKRGI FKKAKELSTL CDADLALIVF SPSGKLFDFA SSSVQEVIER 60 YHMQTSIYRS QDQQSHEFQL EKDTYYLKCK ELTDKTIGLR HLNGEELQGM KIHELQKLEK 120 VLGKGLARVS KEKDERNLKD IIEMKKRGLQ MVQDNHRLKQ MRSQTNSQGX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1egw_A	3e-14	8	61	15	68	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B	3e-14	8	61	15	68	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C	3e-14	8	61	15	68	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D	3e-14	8	61	15	68	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
3kov_A	3e-14	8	61	15	68	Myocyte-specific enhancer factor 2A
3kov_B	3e-14	8	61	15	68	Myocyte-specific enhancer factor 2A
3kov_I	3e-14	8	61	15	68	Myocyte-specific enhancer factor 2A
3kov_J	3e-14	8	61	15	68	Myocyte-specific enhancer factor 2A
3mu6_A	3e-14	8	61	15	68	Myocyte-specific enhancer factor 2A
3mu6_B	3e-14	8	61	15	68	Myocyte-specific enhancer factor 2A
3mu6_C	3e-14	8	61	15	68	Myocyte-specific enhancer factor 2A
3mu6_D	3e-14	8	61	15	68	Myocyte-specific enhancer factor 2A
3p57_A	3e-14	8	61	15	68	Myocyte-specific enhancer factor 2A
3p57_B	3e-14	8	61	15	68	Myocyte-specific enhancer factor 2A
3p57_C	3e-14	8	61	15	68	Myocyte-specific enhancer factor 2A
3p57_D	3e-14	8	61	15	68	Myocyte-specific enhancer factor 2A
3p57_I	3e-14	8	61	15	68	Myocyte-specific enhancer factor 2A
3p57_J	3e-14	8	61	15	68	Myocyte-specific enhancer factor 2A
6bz1_A	4e-14	8	61	16	69	MEF2 CHIMERA
6bz1_B	4e-14	8	61	16	69	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that inhibit floral transition in the autonomous flowering pathway, independent of photoperiod and temperature. Acts in a dosage-dependent manner. Together with AGL24 and AP1, controls the identity of the floral meristem and regulates expression of class B, C and E genes. Promotes EFM expression to suppress flowering (PubMed:25132385). {ECO:0000269\|PubMed:16679456, ECO:0000269\|PubMed:18694458, ECO:0000269\|PubMed:19656343, ECO:0000269\|PubMed:25132385}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the floral homeotic genes AP1 and SEP3 in emerging floral meristems. Up-regulated by HUA2. {ECO:0000269\|PubMed:15659097, ECO:0000269\|PubMed:17428825, ECO:0000269\|PubMed:18694458}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025685925.1	1e-120	MADS-box protein SVP isoform X1
Refseq	XP_025685927.1	1e-120	MADS-box protein SVP isoform X2
Refseq	XP_025685928.1	1e-120	MADS-box protein SVP isoform X2
Swissprot	Q9FVC1	2e-49	SVP_ARATH; MADS-box protein SVP
TrEMBL	A0A445BAP6	1e-114	A0A445BAP6_ARAHY; Uncharacterized protein
STRING	A0A087GSF1	2e-48	(Arabis alpina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	8e-52	MIKC_MADS family protein

Publications ? help Back to Top
Ramamoorthy R,Phua EE,Lim SH,Tan HT,Kumar PP Identification and characterization of RcMADS1, an AGL24 ortholog from the holoparasitic plant Rafflesia cantleyi Solms-Laubach (Rafflesiaceae). PLoS ONE, 2013. 8(6): p. e67243 [PMID:23840638] Jaudal M, et al. Overexpression of Medicago SVP genes causes floral defects and delayed flowering in Arabidopsis but only affects floral development in Medicago. J. Exp. Bot., 2014. 65(2): p. 429-42 [PMID:24249713] Müller-Xing R,Clarenz O,Pokorny L,Goodrich J,Schubert D Polycomb-Group Proteins and FLOWERING LOCUS T Maintain Commitment to Flowering in Arabidopsis thaliana. Plant Cell, 2014. 26(6): p. 2457-2471 [PMID:24920331] Hwan Lee J,Sook Chung K,Kim SK,Ahn JH Post-translational regulation of SHORT VEGETATIVE PHASE as a major mechanism for thermoregulation of flowering. Plant Signal Behav, 2014. 9(4): p. e28193 [PMID:25764420] Chen Z, et al. Overexpression of AtAP1M3 regulates flowering time and floral development in Arabidopsis and effects key flowering-related genes in poplar. Transgenic Res., 2015. 24(4): p. 705-15 [PMID:25820621] Wells CE,Vendramin E,Jimenez Tarodo S,Verde I,Bielenberg DG A genome-wide analysis of MADS-box genes in peach [Prunus persica (L.) Batsch]. BMC Plant Biol., 2015. 15: p. 41 [PMID:25848674] Müller-Xing R,Schubert D,Goodrich J Non-inductive conditions expose the cryptic bract of flower phytomeres in Arabidopsis thaliana. Plant Signal Behav, 2015. 10(4): p. e1010868 [PMID:25924005] Marín-González E, et al. SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures. Plant Physiol., 2015. 169(2): p. 1214-24 [PMID:26243615] Bechtold U, et al. Time-Series Transcriptomics Reveals That AGAMOUS-LIKE22 Affects Primary Metabolism and Developmental Processes in Drought-Stressed Arabidopsis. Plant Cell, 2016. 28(2): p. 345-66 [PMID:26842464] Fernández V,Takahashi Y,Le Gourrierec J,Coupland G Photoperiodic and thermosensory pathways interact through CONSTANS to promote flowering at high temperature under short days. Plant J., 2016. 86(5): p. 426-40 [PMID:27117775] Wilson DC,Kempthorne CJ,Carella P,Liscombe DK,Cameron RK Age-Related Resistance in Arabidopsis thaliana Involves the MADS-Domain Transcription Factor SHORT VEGETATIVE PHASE and Direct Action of Salicylic Acid on Pseudomonas syringae. Mol. Plant Microbe Interact., 2017. 30(11): p. 919-929 [PMID:28812948] Zou YP, et al. Adaptation of Arabidopsis thaliana to the Yangtze River basin. Genome Biol., 2017. 18(1): p. 239 [PMID:29284515] Richter R, et al. Floral regulators FLC and SOC1 directly regulate expression of the B3-type transcription factor TARGET OF FLC AND SVP 1 at the Arabidopsis shoot apex via antagonistic chromatin modifications. PLoS Genet., 2019. 15(4): p. e1008065 [PMID:30946745]