PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy012303
Organism
Arachis hypogaea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MIKC_MADS
Protein Properties Length: 231aa    MW: 27061.9 Da    PI: 9.7379
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S59542684PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.52e-29756251
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                i+n +nrqvt+skRrngi+KKA+ELSvLCda+v++i+fs+++k++ey+s
  Ahy012303  7 LIQNPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYIS 56
               699*********************************************86 PP
2K-box65.12.5e-2273170699
      K-box   6 gks.leeakaeslqqelakLkkeienLqreqRhllGe...dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                g   l+++++e++ ++l+kLk+ +++L+r++R+++Ge   d++++s+++L+ Le+++ +++ kiR++K +++++ +e+ +kk ++l++ n +L  +le
  Ahy012303  73 GDIdLWHSHYEKMLENLKKLKDINNKLRRQIRNRIGEgslDMDDMSFQQLRTLEEDMVSAIAKIRERKFHVIRTRTETCRKKVRSLEQMNGNLLLELE 170
                43359********************************77779*************************************************9987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.301158IPR002100Transcription factor, MADS-box
SMARTSM004326.8E-34157IPR002100Transcription factor, MADS-box
CDDcd002655.30E-35274No hitNo description
SuperFamilySSF554553.4E-33293IPR002100Transcription factor, MADS-box
PfamPF003191.3E-24854IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-152035IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-153556IPR002100Transcription factor, MADS-box
PfamPF014863.2E-1779168IPR002487Transcription factor, K-box
PROSITE profilePS5129713.72182175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
XKIEIKLIQN PTNRQVTYSK RRNGIFKKAH ELSVLCDAKV SLIMFSKNNK MHEYISPGLS  60
TKKIIDQYQK TLGDIDLWHS HYEKMLENLK KLKDINNKLR RQIRNRIGEG SLDMDDMSFQ  120
QLRTLEEDMV SAIAKIRERK FHVIRTRTET CRKKVRSLEQ MNGNLLLELE KCVIHPQFIL  180
HDEGEQESAV ALANGASNLY AFCHHHTHLN HHLHNHHAPP EPFKNDDLRL A
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015964203.11e-171floral homeotic protein PMADS 1 isoform X3
RefseqXP_016200659.11e-171floral homeotic protein PMADS 1 isoform X2
RefseqXP_025653544.11e-171floral homeotic protein PMADS 1 isoform X2
RefseqXP_025698951.11e-171floral homeotic protein PMADS 1 isoform X2
SwissprotQ003J23e-93TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLA0A444Z9C51e-154A0A444Z9C5_ARAHY; Uncharacterized protein
STRINGXP_007157954.11e-145(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.11e-56MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]