PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy012426

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

Whirly

Protein Properties

Length: 294aa MW: 32127.7 Da PI: 5.3963

Description

Whirly family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S58462119	PU_ref	Unigene	View CDS
PUT-171a-Arachis_hypogaea-30549	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Whirly	201.6	1e-62	119	257	1	139
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlp 100 s+yk+kaal++ ++ p+f ldsg++k++r+G +ll++a+a+a r+ydW +kq+f+ls+ e++++++l+++esceffhdp++++s+eGkvrk+lkv+Plp Ahy012426 119 SIYKGKAALSITPRPPEFAPLDSGAFKISREGYVLLQFAPAIASRQYDWTRKQVFSLSVGEMGTVISLGARESCEFFHDPMKGKSDEGKVRKVLKVDPLP 218 7************************************************************************************************* PP Whirly 101 dGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 dGsG+++nlsv+n +v+++e++++Pvs+ae +vl s+++ Ahy012426 219 DGSGHMFNLSVQNRIVNVDENIYIPVSRAELTVLSSIFN 257 **********************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.30.31.10	8.5E-75	107	279	IPR009044	ssDNA-binding transcriptional regulator
SuperFamily	SSF54447	6.51E-73	112	294	IPR009044	ssDNA-binding transcriptional regulator
Pfam	PF08536	2.8E-59	120	254	IPR013742	Plant transcription factor

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
XSVPTAGGLE NEDDKEIEIA AKEEDREQGE EVKDVAVEAT PIPSSLSSSS SSSSNPLCLQ 60 NHSFLSPKFL PFSSVTPKPF SITCRHSDLF DQKTFSSSAP SSSYSSGGAL PPRVYVGHSI 120 YKGKAALSIT PRPPEFAPLD SGAFKISREG YVLLQFAPAI ASRQYDWTRK QVFSLSVGEM 180 GTVISLGARE SCEFFHDPMK GKSDEGKVRK VLKVDPLPDG SGHMFNLSVQ NRIVNVDENI 240 YIPVSRAELT VLSSIFNFIM PYLLGWHTFA NSIKPEDSRG ANNANPTYGG DYEW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1l3a_A	1e-103	108	294	32	218	p24: plant transcriptional regulator PBF-2
1l3a_B	1e-103	108	294	32	218	p24: plant transcriptional regulator PBF-2
1l3a_C	1e-103	108	294	32	218	p24: plant transcriptional regulator PBF-2
1l3a_D	1e-103	108	294	32	218	p24: plant transcriptional regulator PBF-2
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Functional Description ? help Back to Top
Source	Description
UniProt	Single-stranded DNA-binding protein that functions in both chloroplasts and nucleus. In chloroplasts, maintains plastid genome stability by preventing break-induced and short homology-dependent illegitimate recombinations. In nucleus, modulates telomere length homeostasis by inhibiting the action of the telomerase at the extreme termini of chromosomes. Is recruited to a distal element upstream of the kinesin KP1 to mediate the transcriptional repression of KP1. Is required for full salicylic acid-dependent plant disease resistance responses. Can bind double-stranded DNA in vivo. {ECO:0000269\|PubMed:14960277, ECO:0000269\|PubMed:17217467, ECO:0000269\|PubMed:19666500, ECO:0000269\|PubMed:19669906, ECO:0000269\|PubMed:20551348, ECO:0000269\|PubMed:21911368}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid (SA) and infection by H.parasitica. {ECO:0000269\|PubMed:14960277, ECO:0000269\|PubMed:19669906}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016190968.1	0.0	single-stranded DNA-binding protein WHY1, chloroplastic isoform X2
Refseq	XP_025639006.1	0.0	single-stranded DNA-binding protein WHY1, chloroplastic
Swissprot	Q9M9S3	1e-114	WHY1_ARATH; Single-stranded DNA-binding protein WHY1, chloroplastic
TrEMBL	A0A445DP24	0.0	A0A445DP24_ARAHY; Uncharacterized protein
STRING	XP_007153835.1	1e-136	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14410.1	1e-112	ssDNA-binding transcriptional regulator

Publications ? help Back to Top
Lepage É,Zampini É,Brisson N Plastid genome instability leads to reactive oxygen species production and plastid-to-nucleus retrograde signaling in Arabidopsis. Plant Physiol., 2013. 163(2): p. 867-81 [PMID:23969600] Carella P,Wilson DC,Cameron RK Some things get better with age: differences in salicylic acid accumulation and defense signaling in young and mature Arabidopsis. Front Plant Sci, 2014. 5: p. 775 [PMID:25620972] Zampini É,Lepage É,Tremblay-Belzile S,Truche S,Brisson N Organelle DNA rearrangement mapping reveals U-turn-like inversions as a major source of genomic instability in Arabidopsis and humans. Genome Res., 2015. 25(5): p. 645-54 [PMID:25800675] Ren Y,Li Y,Jiang Y,Wu B,Miao Y Phosphorylation of WHIRLY1 by CIPK14 Shifts Its Localization and Dual Functions in Arabidopsis. Mol Plant, 2017. 10(5): p. 749-763 [PMID:28412544] Karpinska B,Alomrani SO,Foyer CH Inhibitor-induced oxidation of the nucleus and cytosol in Arabidopsis thaliana: implications for organelle to nucleus retrograde signalling. Philos. Trans. R. Soc. Lond., B, Biol. Sci., 2018. [PMID:28808105] Huang D,Lin W,Deng B,Ren Y,Miao Y Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis. Int J Mol Sci, 2018. [PMID:29112140] Guan Z,Wang W,Yu X,Lin W,Miao Y Comparative Proteomic Analysis of Coregulation of CIPK14 and WHIRLY1/3 Mediated Pale Yellowing of Leaves in Arabidopsis. Int J Mol Sci, 2018. [PMID:30065159]