PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy012633
Organism
Arachis hypogaea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 261aa    MW: 27437.9 Da    PI: 7.3084
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S59526209PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH322.1e-1083107126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                +kt+lC+ f++ GtC+y  +C+FaH+
  Ahy012633  83 FKTKLCCKFRA-GTCPYVTNCNFAHS 107
                69*********.*************8 PP
2zf-CCCH19.22.2e-06162187126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                yk + C+ f+    C+yGd+C+F H+
  Ahy012633 162 YKGRHCKKFYTEEGCPYGDSCTFLHD 187
                78888********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.92E-880113IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-1480115IPR000571Zinc finger, CCCH-type
SMARTSM003560.001582108IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.86882109IPR000571Zinc finger, CCCH-type
PfamPF006429.1E-883107IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-7160189IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-9160189IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.098161189IPR000571Zinc finger, CCCH-type
SMARTSM003560.086161188IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MDYSRDGDVV QIIAGAANDP SVWATEEDYK FWNNEGDSTP SNSGGGSGYD QRKKARSSQD  60
NNATTSSSNN NSNRAKAIGK MFFKTKLCCK FRAGTCPYVT NCNFAHSVEE LRRPPPNWQE  120
IVAAHEEERA NTGSDTVVPA REEFQIPILG SSNYSGESQR SYKGRHCKKF YTEEGCPYGD  180
SCTFLHDEQS KYRESVAISL GPGGYGGGGG GAGGGGGGGG TGXXXAGAGA GAGAGAGGGG  240
NGNGPNSKPS NWKTRICNKW E
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015963286.11e-144zinc finger CCCH domain-containing protein 12 isoform X1
RefseqXP_015963287.11e-144zinc finger CCCH domain-containing protein 12 isoform X2
RefseqXP_025651189.11e-144zinc finger CCCH domain-containing protein 12-like isoform X1
RefseqXP_025651190.11e-144zinc finger CCCH domain-containing protein 12-like isoform X2
RefseqXP_025697845.11e-144zinc finger CCCH domain-containing protein 12-like isoform X1
RefseqXP_025697846.11e-144zinc finger CCCH domain-containing protein 12-like isoform X2
SwissprotQ9LQM37e-76C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A444WVS81e-142A0A444WVS8_ARAHY; Uncharacterized protein
STRINGAET032645e-96(Medicago truncatula)
STRINGXP_007156415.14e-96(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-73C3H family protein