PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy013186
Organism
Arachis hypogaea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 864aa    MW: 93782.8 Da    PI: 5.4079
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S59558281PU_refUnigeneView CDS
PUT-171a-Arachis_hypogaea-24848PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.91.1e-1095122127
                --S---SGGGGTS.--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaHgp 27 
                +kt+lC++f+r G  C++G  C+FaHg+
  Ahy013186  95 WKTSLCSYFRRHGnSCSHGTACRFAHGE 122
                8*************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.105.5E-1391126IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.69E-792127IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-594122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.51194123IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-895122IPR000571Zinc finger, CCCH-type
CDDcd005905.00E-6187252No hitNo description
Gene3DG3DSA:3.30.70.3303.0E-6190252IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549286.66E-6190261IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5168746.401313864IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533359.63E-9315341IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533359.63E-9373466IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1508.0E-64566666IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533356.67E-35566666IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138474.5E-9610668IPR025714Methyltransferase domain
CDDcd024403.16E-6612666No hitNo description
Gene3DG3DSA:3.40.50.1508.0E-64746803IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF059581.0E-8751799IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533356.67E-35751813IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PROSITE patternPS012300759791IPR030390RNA methyltransferase TrmA, active site
Gene3DG3DSA:3.40.50.1508.0E-64839864IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533356.67E-35848864IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 864 aa     Download sequence    Send to blast
XTFANTPLER MEETNTELSP SKTLSPTNGQ DSIIQSNLTA TNEPETHTEN QIPEAEHQSD  60
VVAGEKRKRD DDEAGESVDG GSGASGEDRS LHPLWKTSLC SYFRRHGNSC SHGTACRFAH  120
GEEELRIRPD NTWDPTSERA KKALKSENGE RCGVSEEVMM TEAVVDDDDG GDEENGGGGS  180
NHALSKCLVH LPRKWCSDNL RSFLNDAGIR FKHAKKKKGM MVGFVSFEDE EQMQSSSKDL  240
EGKSIGNKRL KVADVIPRSF EKNSNSNAGS VATLNEENAG VDVDPNVTVE AGANSDNLAA  300
NGSLSKTKSL RDVVTPLAHM AYADQLEQKK NSIMQMLKKL TRNARKACPN GVSFPDWIVK  360
SREIGGLPCN LEGIIASPIV NGYRNKCEFS VGYSLEGKVT VGFMLGNFRE GVTAVEEAVD  420
CPNVSTIAGK YATIFQEFLQ QSDLPVWNRF KNSGFWRQLT VREGRTNGNV ADADSFGGIA  480
EVMLIVQVST AGFDDTKVSG EFKRLAQAFA VGATSHGPTL PLTALVVQDH QGISNVAPAD  540
APLRLLPIRK TGDLEMDENA DAMDVRIHDY ISNLRFSISP TAFFQVNTLA AEKLYSLAGD  600
WACLGPDTLL FDICCGTGTI GLTLAHRVGM VIGIEMNASA VADAHRNAEI NGIKNCKFIC  660
SKAEDVMGSL LKEYLNVPKE QVDDPKIAES SNDISKCGDL QEPENGEMAS QSSENSNGEV  720
GSEVQNCSGS ENGNTSAQNS SEGANTSAQH FKNVVAIVDP PRAGLHPTVL KVLRTHSRLR  780
RLVYISCNPE TLVANAIELC TPSPIKMEKG NKDNRGWRNM SSAGLARHRA KSMPISEAFH  840
PVKAMAVDLF PHTQHCELVM LLER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xj1_A7e-18568686262384Uncharacterized RNA methyltransferase SP_1029
5xj2_A7e-18568686262384Uncharacterized RNA methyltransferase SP_1029
5xj2_B7e-18568686262384Uncharacterized RNA methyltransferase SP_1029
5xj2_C7e-18568686262384Uncharacterized RNA methyltransferase SP_1029
5xj2_D7e-18568686262384Uncharacterized RNA methyltransferase SP_1029
5zq0_A7e-18568686263385Uncharacterized RNA methyltransferase SP_1029
5zq1_A7e-18568686262384Uncharacterized RNA methyltransferase SP_1029
5zq8_A7e-18568686262384Uncharacterized RNA methyltransferase SP_1029
5zq8_B7e-18568686262384Uncharacterized RNA methyltransferase SP_1029
5zth_A7e-18568686263385Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016187410.10.0zinc finger CCCH domain-containing protein 24
RefseqXP_025641809.10.0zinc finger CCCH domain-containing protein 24
SwissprotQ8L7S30.0C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A445E4I20.0A0A445E4I2_ARAHY; Uncharacterized protein
STRINGGLYMA12G07300.30.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.10.0C3H family protein
Publications ? help Back to Top
  1. Wang Y, et al.
    Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.
    BMC Plant Biol., 2017. 17(1): p. 261
    [PMID:29268705]