PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy013472
Organism
Arachis hypogaea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ARF
Protein Properties Length: 590aa    MW: 66014.4 Da    PI: 6.6785
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S59524564PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3764.2e-2435136199
                EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                f+kvlt sd++++g +++ +k+a+e+     +++++ +++l+ +d++g +W++k+i+r++++r+++t+GW+ Fv +++L +gD++vF   + +++el+v+
  Ahy013472  35 FCKVLTASDTSTHGGFSVLRKHATEClpaldMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLITTGWSTFVASKRLVAGDTFVFL--RGHNGELRVG 132
                99****************************977777888*************************************************..3489999*** PP

                EE-S CS
         B3  96 vfrk 99 
                ++r+
  Ahy013472 133 LRRN 136
                *997 PP
2Auxin_resp92.75.9e-31161242183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedss..errlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha++t++ F v+Y+Pr   s+F+v ++k+++a+++k++v mRfkm+fe+ed +  err+sGt+vgv+d++p  W nS+WrsLk
   Ahy013472 161 ASHAVATQTLFVVYYKPRR--SQFIVGLNKYLEAMNHKFAVAMRFKMRFEGEDTPenERRFSGTIVGVEDISP-YWVNSNWRSLK 242
                 789***************6..9*******************************86226889***********9.9********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.67E-3827164IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.9E-4028150IPR015300DNA-binding pseudobarrel domain
CDDcd100173.41E-2033135No hitNo description
PfamPF023624.0E-2235136IPR003340B3 DNA binding domain
SMARTSM010194.9E-2335137IPR003340B3 DNA binding domain
PROSITE profilePS5086312.25235137IPR003340B3 DNA binding domain
PfamPF065072.3E-29161242IPR010525Auxin response factor
PfamPF023096.2E-13454562IPR033389AUX/IAA domain
PROSITE profilePS5174527.484478559IPR000270PB1 domain
SuperFamilySSF542773.09E-13481554No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
EVYAQITLVP ESNQAEPTSP DLCPAELPRP QNHSFCKVLT ASDTSTHGGF SVLRKHATEC  60
LPALDMSQPT PTQELVAKDL HGYEWRFKHI FRGQPRRHLI TTGWSTFVAS KRLVAGDTFV  120
FLRGHNGELR VGLRRNTPQP SSMPSSVISS QSMHLGVLAT ASHAVATQTL FVVYYKPRRS  180
QFIVGLNKYL EAMNHKFAVA MRFKMRFEGE DTPENERRFS GTIVGVEDIS PYWVNSNWRS  240
LKVLWDEPAS VPRPDRVSPW EIEPLMASVV TSSLQSPVLK NKRPRLPGEV HELDTRSAAS  300
TFWDAALAHS DVTQLSVIAE SNMSDGTHVW NHKLIDNSKG SYNAMSRIQT EAIRVSSPHS  360
SGPSQLFLDT TFDDGKRLNN NDHLLDQVDK EHKMETATSC RLFGIELIDH AKNSPAVEKA  420
SSIANASGVT NEGSVNTMSR TDADQNSDMV KTSNKERKHE EPPQVSKRET QSKQICSRSC  480
TKVQMQGVAV GRAIDLTMLE GYDQLVEELE KLFDIKGELQ HRNTWQIVFT DDEGDMMLVG  540
DDPWPEFCNM VRRIFICSSQ DVKKMSSVRT KVPLSLTEEE TVISSDTAGT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-127126590355Auxin response factor 1
4ldw_A1e-127126590355Auxin response factor 1
4ldw_B1e-127126590355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016198542.10.0auxin response factor 9
RefseqXP_016198543.10.0auxin response factor 9
RefseqXP_020976994.10.0auxin response factor 9
RefseqXP_025648598.10.0auxin response factor 9 isoform X1
RefseqXP_025648599.10.0auxin response factor 9 isoform X1
RefseqXP_025648600.10.0auxin response factor 9 isoform X2
RefseqXP_029147976.10.0auxin response factor 9 isoform X1
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A444ZNN20.0A0A444ZNN2_ARAHY; Auxin response factor
STRINGGLYMA03G17450.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9