PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy013497

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C2H2

Protein Properties

Length: 244aa MW: 27604.3 Da PI: 9.9949

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S59542955	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.9	1.8e-05	49	69	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H Ahy013497 49 CEICGKGFQRDQNLQLHRRGH 69 *******************88 PP
2	zf-C2H2	13.4	0.00024	124	146	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ Ahy013497 124 WKCDKCSKKYAVQSDWKAHSKTC 146 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.8E-5	46	69	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.53E-8	46	69	No hit	No description
PROSITE profile	PS50157	11.489	47	69	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.076	47	69	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	49	69	IPR007087	Zinc finger, C2H2
SMART	SM00355	85	89	119	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	7.2E-5	112	145	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.53E-8	119	144	No hit	No description
SMART	SM00355	150	124	144	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MSNFTPPPPT QTHGQVNKKK RSLPGNPDPD AEVIALSPKT LMATNRFLCE ICGKGFQRDQ 60 NLQLHRRGHN LPWKLKQRTK TEVVRKKVYV CPEPSCVHHD PGRALGDLTG IKKHFSRKHG 120 EKKWKCDKCS KKYAVQSDWK AHSKTCGTRE YRCDCGTLFS RRDSFITHRA FCDALAEESA 180 RAVTAVSQSQ SHEIHGFSLK QEQQSSFSTM TPWLDFSSVT TTTTTPRLDL DEQVPNRNPN 240 PSGV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-36	120	181	3	64	Zinc finger protein JACKDAW
5b3h_F	2e-36	120	181	3	64	Zinc finger protein JACKDAW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	75	86	KQRTKTEVVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269\|PubMed:17785527, ECO:0000269\|PubMed:21935722, ECO:0000269\|PubMed:24821766, ECO:0000269\|PubMed:25829440}.
UniProt	Transcription factor that, together with JKD, regulates tissue boundaries and asymmetric cell division in roots by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:25829440). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:24821766, ECO:0000269\|PubMed:25829440}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269\|PubMed:21935722}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016169850.1	0.0	protein indeterminate-domain 11
Refseq	XP_025670759.1	0.0	protein indeterminate-domain 11 isoform X2
Refseq	XP_029150864.1	0.0	protein indeterminate-domain 11 isoform X1
Swissprot	Q944L3	1e-109	IDD9_ARATH; Zinc finger protein BALDIBIS
Swissprot	Q9ZWA6	1e-109	IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBL	A0A445BV15	1e-174	A0A445BV15_ARAHY; Uncharacterized protein
STRING	XP_008338718.1	1e-119	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-101	C2H2 family protein

Publications ? help Back to Top
Muñoz-Strale D,León G Identification of two highly specific pollen promoters using transcriptomic data. Plant Physiol. Biochem., 2014. 83: p. 292-9 [PMID:25208507] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]