PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy013797
Organism
Arachis hypogaea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 293aa    MW: 32123.7 Da    PI: 8.5224
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S59552824PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.39.4e-123965127
               --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
               ++++ C+++ rtG C++G++C+F+H+p
  Ahy013797 39 PGEPDCSYYIRTGLCRFGATCRFNHPP 65
               5789*********************97 PP
2zf-CCCH39.59.1e-1386110327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                +++C+++++tGtCk+G++CkF+H++
  Ahy013797  86 QPECQYYLKTGTCKFGATCKFHHPR 110
                799********************96 PP
3zf-CCCH37.83.2e-12132156327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                +++C +++rtG+Ck+G++CkF+H++
  Ahy013797 132 EAECAYYLRTGQCKFGNTCKFHHPQ 156
                789********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.2E-43865IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9763966IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-84065IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-54366IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-44464IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.15983111IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-683110IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-1086110IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-787112IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-589110IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.159129157IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5129156IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-6130157IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-10132156IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4135155IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MEFDAAIPMS REGIPQDAMW QMNLRSSETM EPGPYPEHPG EPDCSYYIRT GLCRFGATCR  60
FNHPPNRKLA IAAARMKGEF PERIGQPECQ YYLKTGTCKF GATCKFHHPR DKAGIAGRVA  120
LNILGYPLRP NEAECAYYLR TGQCKFGNTC KFHHPQPSNM VLSMRSSPVY PTVHSPTTPG  180
QQSYAAGITN WSSSSYIASP RWQGPSSYAS LILPQGVVSV PGWGAYNGQM GSDSTQQSVG  240
NGQTYASSRQ GESANAGSQG AYSQYRSGSV PVGFYALQRE NIFPERPGQP ECX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016194000.10.0zinc finger CCCH domain-containing protein ZFN-like
RefseqXP_025649601.10.0zinc finger CCCH domain-containing protein ZFN-like
RefseqXP_025696351.10.0zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A444ZRD50.0A0A444ZRD5_ARAHY; Uncharacterized protein
STRINGGLYMA09G38650.30.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-121zinc finger protein 1