PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy013824
Organism
Arachis hypogaea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family LBD
Protein Properties Length: 124aa    MW: 13600.4 Da    PI: 9.3877
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S59509224PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260148.51.7e-46171161100
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                +CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvh++FGasnv k+l++lp ++r+da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+a+la +++e
  Ahy013824  17 PCAACKLLRRRCAQDCVFAPYFPADEPHKFANVHRVFGASNVNKMLQDLPMHQRRDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLAIAQAE 116
                7**********************************************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.76616117IPR004883Lateral organ boundaries, LOB
PfamPF031955.0E-4617114IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MKEQGGGGGR KQGAASPCAA CKLLRRRCAQ DCVFAPYFPA DEPHKFANVH RVFGASNVNK  60
MLQDLPMHQR RDAVSSMVYE ANARVRDPVY GCVGAISSLQ QQIDVLQAQL AIAQAEVVHL  120
KMRX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-50131187112LOB family transfactor Ramosa2.1
5ly0_B3e-50131187112LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016197703.16e-87LOB domain-containing protein 4
RefseqXP_025646223.16e-87LOB domain-containing protein 4
SwissprotQ9SHE94e-67LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A444ZDK51e-85A0A444ZDK5_ARAHY; Uncharacterized protein
STRINGXP_004505337.13e-79(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.11e-69LOB domain-containing protein 4