PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy013979
Organism
Arachis hypogaea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MIKC_MADS
Protein Properties Length: 285aa    MW: 32931.6 Da    PI: 9.6547
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S58462756PU_refUnigeneView CDS
gnl|UG|Ahy#S58474511PU_unrefUnigeneView CDS
PUT-171a-Arachis_hypogaea-29747PU_unrefplantGDBView CDS
PUT-171a-Arachis_hypogaea-29748PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.84.6e-3159108150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 
                krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fss+g+lyey+
  Ahy013979  59 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYA 108
                79***********************************************8 PP
2K-box1072.2e-351272234100
      K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                s+++s++ea+++ +qqe++kL+++i+ +q+ +Rh+lGe L+sLslkeL++Le++Lek+l+++Rs+K+e l++ +e +qk+e elq++n++Lr+k++e
  Ahy013979 127 SNTESVSEANTQFYQQESSKLRRQIRDIQNLNRHILGEALSSLSLKELKNLESRLEKGLSRVRSRKHETLFADVEFMQKREIELQNHNNYLRAKIAE 223
                34455*****************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.6E-4251110IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.96451111IPR002100Transcription factor, MADS-box
CDDcd002651.36E-4452128No hitNo description
SuperFamilySSF554554.97E-3352129IPR002100Transcription factor, MADS-box
PROSITE patternPS00350053107IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-335373IPR002100Transcription factor, MADS-box
PfamPF003191.3E-2660107IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-337388IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-3388109IPR002100Transcription factor, MADS-box
PfamPF014861.3E-24134221IPR002487Transcription factor, K-box
PROSITE profilePS5129714.559137227IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
XNPKRGFEIQ KPFRVPTSSG INAECPITNQ GTMELPNQAP EEGSSQHQKK MGRGKIEIKR  60
IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALVVFSS RGRLYEYANN SVRGTIERYK  120
KASAASSNTE SVSEANTQFY QQESSKLRRQ IRDIQNLNRH ILGEALSSLS LKELKNLESR  180
LEKGLSRVRS RKHETLFADV EFMQKREIEL QNHNNYLRAK IAEHERAQQQ QQQEQEQQNL  240
MHGNMCEDQS TIASQTYDRN FFPINLLDSN NHQYSRQDHT ALQLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P7e-2151123173Myocyte-specific enhancer factor 2B
1tqe_Q7e-2151123173Myocyte-specific enhancer factor 2B
1tqe_R7e-2151123173Myocyte-specific enhancer factor 2B
1tqe_S7e-2151123173Myocyte-specific enhancer factor 2B
6c9l_A7e-2151123173Myocyte-specific enhancer factor 2B
6c9l_B7e-2151123173Myocyte-specific enhancer factor 2B
6c9l_C7e-2151123173Myocyte-specific enhancer factor 2B
6c9l_D7e-2151123173Myocyte-specific enhancer factor 2B
6c9l_E7e-2151123173Myocyte-specific enhancer factor 2B
6c9l_F7e-2151123173Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016166121.10.0floral homeotic protein AGAMOUS isoform X2
RefseqXP_020962678.10.0floral homeotic protein AGAMOUS isoform X3
RefseqXP_025667575.10.0floral homeotic protein AGAMOUS isoform X1
RefseqXP_025667576.10.0floral homeotic protein AGAMOUS isoform X2
SwissprotQ93XH41e-122MADS1_VITVI; Agamous-like MADS-box protein MADS1
TrEMBLA0A445C3N11e-173A0A445C3N1_ARAHY; Uncharacterized protein
STRINGGLYMA14G03100.11e-148(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.15e-97MIKC_MADS family protein
Publications ? help Back to Top
  1. Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR
    A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development.
    Plant Mol. Biol., 2001. 45(5): p. 541-53
    [PMID:11414613]
  2. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  3. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]