PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy014546

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

YABBY

Protein Properties

Length: 179aa MW: 20197.6 Da PI: 8.707

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S59539214	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	229.8	7e-71	2	161	6	170
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeen.lksnvekeesastsvsseklsen 104 ++e+vCyv+CnfCntilavsvP++sl+++vtvrCGhC++ll+vn+ + q l ++ e+ +++++++l +ee++ +k+ +++++ ++ + e Ahy014546 2 ATERVCYVHCNFCNTILAVSVPYSSLLTLVTVRCGHCANLLTVNMGASLQPLIPPHQ--EHHHQSQKQHLSFEESSsCKELGSSSSKCNKIAPFEP---V 96 689**************************************99998876654443..3344445555555544403333333333444444444...4 PP YABBY 105 edeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 e++++ r+pp irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl Ahy014546 97 ESHQSHRIPP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 161 4455555566.9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	4.4E-73	2	161	IPR006780	YABBY protein
SuperFamily	SSF47095	1.7E-8	105	154	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.6E-5	109	155	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MATERVCYVH CNFCNTILAV SVPYSSLLTL VTVRCGHCAN LLTVNMGASL QPLIPPHQEH 60 HHQSQKQHLS FEESSSCKEL GSSSSKCNKI APFEPVESHQ SHRIPPIRPP EKRQRVPSAY 120 NRFIKEEIQR IKASNPDISH REAFSTAAKN WAHFPHIHFG LKMDGNNDKQ AKLDHNNGX

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016188474.1	1e-132	putative axial regulator YABBY 2 isoform X1
Refseq	XP_025643184.1	1e-132	putative axial regulator YABBY 2 isoform X1
Swissprot	Q9XFB0	3e-71	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A445E1E9	1e-117	A0A445E1E9_ARAHY; Uncharacterized protein
STRING	GLYMA12G10210.3	7e-91	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	2e-68	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]