PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy014630
Organism
Arachis hypogaea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 457aa    MW: 51302.6 Da    PI: 8.8487
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S59524728PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.63.7e-12320345126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                y   +C+++ +tG+C yGd+CkF+H+
  Ahy014630 320 YQPDICKDYKETGYCGYGDSCKFMHD 345
                66789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.01E-9318350IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7319346IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878319347IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-12320350IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-10320345IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.104.8E-13382437IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139201.3E-8395436No hitNo description
SuperFamilySSF578503.26E-12395438No hitNo description
CDDcd001621.18E-7396437No hitNo description
SMARTSM001843.6E-4396433IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.409396434IPR001841Zinc finger, RING-type
PROSITE patternPS005180411420IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
SSSRQLPPSL IPRPAPEVAV TGAVPAAHLA CVAGLVRVGV AVQKAHRGSF SFLLFLCDRR  60
KFRRRRHRCS IRPVLLHRYS VQLLIGFHKG SSLPNKVSGT GNILNIFKIS CFSLWHSSRI  120
VVAEFSXMAD SDEVAKSAEN QQTEQVCSFF RKPINKKNIR KRAIDSEDEG DDSKNENSLL  180
HAQKKAPKPD NKLYFSTGPS KSSVSTEPSE ESEKTGFHFE SSKEIQVQHD SKATATLETE  240
TDFSRDARAI RERALKQAEE SLKGKGTSSE DGKLYKGMNS YKDYKAGFRR EQTIASEKAG  300
GSHGPLRASA HIRVSARFDY QPDICKDYKE TGYCGYGDSC KFMHDRGDYK SGWQLEKEWD  360
EAEKARRMRL AAGEDADEES ADLADSDDED ALPFACFICR KPFADPVVTK CKHYFCEHCA  420
LKHHAKNKKC FVCNQPTLGI FNVAHEIRKK MAEDKDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M3e-66230451113317RING finger protein 113A
5z58_M3e-66230451113317RING finger protein 113A
6ff4_t3e-66230451113317RING finger protein 113A
6ff7_t3e-66230451113317RING finger protein 113A
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016183074.10.0zinc finger CCCH domain-containing protein 1
RefseqXP_020971264.10.0zinc finger CCCH domain-containing protein 1
RefseqXP_025632420.10.0zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-167C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A445AEU90.0A0A445AEU9_ARAHY; Uncharacterized protein
STRINGXP_007134882.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-151C3H family protein