PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy015120
Organism
Arachis hypogaea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ARF
Protein Properties Length: 766aa    MW: 85939.8 Da    PI: 6.659
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S59551432PU_refUnigeneView CDS
PUT-171a-Arachis_hypogaea-19685PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.52.2e-22126226198
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f+k+lt sd++++g +++ +++a+++       +++    ++l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F   + +++el+
  Ahy015120 126 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL--RGENGELR 221
                99****************************964333..4459************************************************..449999** PP

                EEEE- CS
         B3  94 vkvfr 98 
                v+v+r
  Ahy015120 222 VGVRR 226
                ***97 PP
2Auxin_resp110.71.5e-36252334183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha++t++ F+v+Y+Pr+s+seF+v+++k+++a ++k+svGmRfkm+fe+++++err+sGt+vgv d+ ++ W +S+WrsLk
   Ahy015120 252 ASHAIATGTLFSVFYKPRTSRSEFIVSINKYLEARNHKLSVGMRFKMRFEGDEVPERRFSGTIVGVGDSTSSVWADSEWRSLK 334
                 789******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.49E-44115255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.3E-41122241IPR015300DNA-binding pseudobarrel domain
CDDcd100171.62E-20124226No hitNo description
SMARTSM010191.0E-21126228IPR003340B3 DNA binding domain
PROSITE profilePS5086311.279126228IPR003340B3 DNA binding domain
PfamPF023623.2E-20126226IPR003340B3 DNA binding domain
PfamPF065078.1E-35252334IPR010525Auxin response factor
PfamPF023094.9E-11542636IPR033389AUX/IAA domain
PROSITE profilePS5174527.011546639IPR000270PB1 domain
SuperFamilySSF542773.83E-11548623No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 766 aa     Download sequence    Send to blast
MASNQIQSST TIHAGATNDA LYKELWHACA GPLVTLPREG ERVYYFPQGH MEQLEASMNQ  60
GLEQQMPSFN LPSKILCKVV NVHLRAEPET DEVYAQITLL PEADQSEVVS PDDPLPEPPR  120
CTVHSFCKTL TASDTSTHGG FSVLRRHADD CLPPLDMSQQ PPWQELVATD LHGNEWHFRH  180
IFRGQPRRHL LTTGWSVFVS SKKLVAGDAF IFLRGENGEL RVGVRRLMRQ QNNMPSSVIS  240
SHSMHLGVLA TASHAIATGT LFSVFYKPRT SRSEFIVSIN KYLEARNHKL SVGMRFKMRF  300
EGDEVPERRF SGTIVGVGDS TSSVWADSEW RSLKVQWDEP SSILRPDRVS PWELEPLVST  360
TPANSQPAQR TKRSRPPILP SPMPDSSMQG VWKPPVESPS FSYREHGRDL YPSPKFNSNA  420
AKFLGFGGNI SAPNKSIYWS NRMENSTESF SPIALKESAE KRQGTGNGCR LFGIQLLDNA  480
HAEESLPTVI LSGRVGDDRS VPSLDGESDQ QSEPSNVNQS DIPSASCDAE KSCLRSPQES  540
QSRQIRSCTK VHMQGMAVGR AVDLTRFDGY EDLLWKLEEM FDIKGELCGS EKKWQVVYTD  600
NEDDMMMVGD DPWLEFCSVV RKIFIYTVEE VKKLSPKIGL PINEVVKPSK LDAEAGVNPE  660
DQSSVVGPGC XVLLVEKQNS SLYYNKHQNG SVTREKLDEL DKHFIMDYRS HYLVYSVYPK  720
RHGSINTSKQ KTGLIPLFDL PGKIGFWYFW ALCFFRGLVY ANGSCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.01435912357Auxin response factor 1
4ldw_A0.01435912357Auxin response factor 1
4ldw_B0.01435912357Auxin response factor 1
4ldx_A0.01435912357Auxin response factor 1
4ldx_B0.01435912357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016197316.10.0auxin response factor 1 isoform X2
RefseqXP_025645692.10.0auxin response factor 1 isoform X2
SwissprotQ8L7G00.0ARFA_ARATH; Auxin response factor 1
TrEMBLA0A445DK370.0A0A445DK37_ARAHY; Auxin response factor
STRINGAES631250.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Montesinos JC,Pastor-Cantizano N,Robinson DG,Marcote MJ,Aniento F
    Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum.
    Plant J., 2014. 80(6): p. 1014-30
    [PMID:25312353]
  2. Marais C, et al.
    The Qb-SNARE Memb11 interacts specifically with Arf1 in the Golgi apparatus of Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(21): p. 6665-78
    [PMID:26208648]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]