PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy015578
Organism
Arachis hypogaea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family LBD
Protein Properties Length: 181aa    MW: 19814.7 Da    PI: 5.9926
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S59550352PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26068.91.1e-2126537100
     DUF260  37 FGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                FGasnv+kll ++p ++r++a+++++yeA+ar++dPvyG+v++il+lqqq+++l+ae+a+++++
  Ahy015578   2 FGASNVSKLLLHVPAHRRNEAVATICYEAQARLSDPVYGCVSTILSLQQQVASLQAEVAMTQTQ 65 
                9**********************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089112.422166IPR004883Lateral organ boundaries, LOB
PfamPF031953.3E-20263IPR004883Lateral organ boundaries, LOB
Gene3DG3DSA:1.20.1600.103.6E-647107No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
XFGASNVSKL LLHVPAHRRN EAVATICYEA QARLSDPVYG CVSTILSLQQ QVASLQAEVA  60
MTQTQVMNGR IAYASVLDTT QQQQQQQQAL QHHHPNMMIN TLGLYPAFSN SSSASTTNLM  120
NITNFNPATG GFDLSMEAAT APSSSHSIHP LHHNSNFSRL SQYDDDDEQE SKIPPVFNPD  180
L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-1726847113LOB family transfactor Ramosa2.1
5ly0_B3e-1726847113LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025624634.11e-111LOB domain-containing protein 20
TrEMBLA0A445B1Q61e-110A0A445B1Q6_ARAHY; Uncharacterized protein
STRINGGLYMA10G11031.12e-54(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.12e-22LOB domain-containing protein 20