PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy016009

Common Name

MYB23

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

MYB_related

Protein Properties

Length: 299aa MW: 33029.9 Da PI: 10.1787

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S59545733	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.6	4.5e-11	5	56	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT eE+ l+ +v ++G g W+tI + R+ ++k++w+++ Ahy016009 5 KQKWTSEEEAALKAGVVKHGVGKWRTILKDPEfsgvlYLRSNVDLKDKWRNL 56 79*********************************88*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.155	1	58	IPR017930	Myb domain
SuperFamily	SSF46689	5.03E-16	2	71	IPR009057	Homeodomain-like
SMART	SM00717	1.7E-6	4	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.1E-13	4	56	IPR009057	Homeodomain-like
Pfam	PF00249	1.7E-7	5	56	IPR001005	SANT/Myb domain
CDD	cd11660	8.22E-19	6	56	No hit	No description
SuperFamily	SSF46785	3.81E-16	117	197	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00526	1.4E-11	118	183	IPR005818	Linker histone H1/H5, domain H15
PROSITE profile	PS51504	21.879	120	188	IPR005818	Linker histone H1/H5, domain H15
Gene3D	G3DSA:1.10.10.10	8.6E-14	120	189	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00538	1.4E-7	125	181	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MGAPKQKWTS EEEAALKAGV VKHGVGKWRT ILKDPEFSGV LYLRSNVDLK DKWRNLSVMA 60 NGWSSREKSR LAIRRVHQAP KHDENPFAVA PFTPSDEDIV DVKPIQVSRE VVPFSGPKRS 120 IVRLDNLIME AITTLKETGG SNKTTIAAFI EDQYWAPPDF KRLLSAKLKY LTACGKLIKV 180 KRRYRIAPTP AYSDRRRSSS LLMDGRQKAS LRGDKEETNV LTKSQVDLEL AKIRSMSAQE 240 AAAVAARAVA EAEAAIAEAE EAAREAETAE ADAEAAQAFA DAAMKTLKGR NTPKMMIHA

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats. {ECO:0000269\|PubMed:19102728}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016197828.1	0.0	telomere repeat-binding factor 1 isoform X1
Refseq	XP_020976404.1	0.0	telomere repeat-binding factor 1 isoform X1
Refseq	XP_025646328.1	0.0	telomere repeat-binding factor 1 isoform X1
Refseq	XP_025646329.1	0.0	telomere repeat-binding factor 1 isoform X1
Refseq	XP_029147844.1	0.0	telomere repeat-binding factor 1 isoform X1
Swissprot	Q8VWK4	1e-106	TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBL	V5T6Q3	0.0	V5T6Q3_ARAHY; Putative MYB-related protein 23
STRING	XP_004486503.1	1e-139	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49950.3	1e-102	telomere repeat binding factor 1

Publications ? help Back to Top
Alexandrov NN, et al. Features of Arabidopsis genes and genome discovered using full-length cDNAs. Plant Mol. Biol., 2006. 60(1): p. 69-85 [PMID:16463100] Chen N, et al. Identification of 30 MYB transcription factor genes and analysis of their expression during abiotic stress in peanut (Arachis hypogaea L.). Gene, 2014. 533(1): p. 332-45 [PMID:24013078] Schrumpfová PP, et al. Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase. Plant J., 2014. 77(5): p. 770-81 [PMID:24397874] Liang SC, et al. Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2. PLoS Genet., 2015. 11(12): p. e1005660 [PMID:26642436] Fulcher N,Riha K Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana. Front Genet, 2015. 6: p. 349 [PMID:26779251] Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]