PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy016262
Organism
Arachis hypogaea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 339aa    MW: 36745.6 Da    PI: 7.5014
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S59552633PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH309e-1085109126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                ykt++C  f+  GtC+ G++C+FaHg
  Ahy016262  85 YKTRICAKFRL-GTCRNGENCNFAHG 109
                9**********.*************8 PP
2zf-CCCH27.55.6e-09146169225
                -S---SGGGGTS--TTTTT-SS-S CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                k++lC+ f+ + +C+yG+rC+F H
  Ahy016262 146 KMKLCKKFYNGEECPYGERCSFLH 169
                789*******66************ PP
3zf-CCCH40.93.3e-13249275127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +kt+lC  +  tG+C++G+ C+FaHg+
  Ahy016262 249 WKTKLCIKWETTGHCPFGGDCHFAHGQ 275
                8************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.0E-1481117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-882115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.24484111IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-584110IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-785109IPR000571Zinc finger, CCCH-type
SMARTSM003560.0025144171IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-7144171IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.723144172IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-9146170IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-6146169IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-15246280IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-10247279IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5248275IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.267248276IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-10249275IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
IEIMNFPDNI QTFTMSPTRF ASTDAIDVRL RQVPMNNESL DLHSHLDQTP LAKRPRTSME  60
NLNDSPRTMN TANPAGNKGT SHIFYKTRIC AKFRLGTCRN GENCNFAHGA DDVRQPPPNW  120
QEIVGLRGND ERSSGNWDDD HKIIHKMKLC KKFYNGEECP YGERCSFLHE DPGKFREDSN  180
SARYRDRESS VISIGTTNGS PPKGYGGGDG GGSRCNSSEG CGNNRAVNNG NGGVAGLNVS  240
RGSSKGTYWK TKLCIKWETT GHCPFGGDCH FAHGQAELQA PGGRAEAEVV GAISASTKSA  300
VPNLPNVVSS VHANEVHPSN TASVPPANED GLSAQVERI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016179224.10.0zinc finger CCCH domain-containing protein 39
RefseqXP_025683784.10.0zinc finger CCCH domain-containing protein 39
TrEMBLA0A444WXJ30.0A0A444WXJ3_ARAHY; Uncharacterized protein
STRINGGLYMA05G08450.11e-132(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.13e-75C3H family protein