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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Ahy016308 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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| Family | BBR-BPC | ||||||||
| Protein Properties | Length: 306aa MW: 34280.6 Da PI: 9.8623 | ||||||||
| Description | BBR-BPC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GAGA_bind | 309.1 | 1.5e-94 | 11 | 306 | 9 | 293 |
GAGA_bind 9 rnkg.yye...............paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla 92
r+ yy+ + ++l +++++ s++aer a i e ++a+sek++a+a+rd+a+ qrd+a+a+r++a+ erdn+l+al+ +e++++
Ahy016308 11 RHTIdYYRganspwsmasqhqvtEPNALV--MNKKIRSIMAERRA-ILELEAAISEKNEALAARDEALRQRDEAIAQRDNAIRERDNALAALQNREDAIN 107
66655777777777777755543225666..99********9975.5677777********************************************988 PP
GAGA_bind 93 salpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakk..pkekkak.kkkkksekskkkvkkesaderska 189
++l g +v +g+k +++ + +++d ++++++ ++++a+p++ +++a ++++ kk++++k+ pk+ k+ k kk +e+ +++ ++e+ ++ k+
Ahy016308 108 FSL--GNGVQRGSKRMHHPAN-YLDNMTDATYNTKDVRITDAFPVTIIPSDAIKSHQAKKTKENKTisPKAAKTPsKGKKMGEDLNQRASSEG--TKFKS 202
887..5667799999998877.5689******************9999988888777776665554115554443256666666655555555..78*** PP
GAGA_bind 190 ekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhW 289
e++ +d++ln v++De+ +PvPvC+CtG++rqCYkWGnGGWqS+CCttt+SvyPLP+ +++r+aRi+grKmS+++f++lL++ aa+G+dls p+DLkd+W
Ahy016308 203 EWDRQDVGLNLVTFDETYMPVPVCTCTGVPRQCYKWGNGGWQSSCCTTTLSVYPLPQLPNKRHARIGGRKMSGSVFTRLLSRFAAQGHDLSVPLDLKDYW 302
**************************************************************************************************** PP
GAGA_bind 290 AkHG 293
A+HG
Ahy016308 303 ARHG 306
***9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SMART | SM01226 | 1.4E-119 | 1 | 306 | IPR010409 | GAGA-binding transcriptional activator |
| Pfam | PF06217 | 4.6E-88 | 1 | 306 | IPR010409 | GAGA-binding transcriptional activator |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 306 aa Download sequence Send to blast |
MDDGHKHGNS RHTIDYYRGA NSPWSMASQH QVTEPNALVM NKKIRSIMAE RRAILELEAA 60 ISEKNEALAA RDEALRQRDE AIAQRDNAIR ERDNALAALQ NREDAINFSL GNGVQRGSKR 120 MHHPANYLDN MTDATYNTKD VRITDAFPVT IIPSDAIKSH QAKKTKENKT ISPKAAKTPS 180 KGKKMGEDLN QRASSEGTKF KSEWDRQDVG LNLVTFDETY MPVPVCTCTG VPRQCYKWGN 240 GGWQSSCCTT TLSVYPLPQL PNKRHARIGG RKMSGSVFTR LLSRFAAQGH DLSVPLDLKD 300 YWARHG |
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. | |||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016169927.1 | 0.0 | protein BASIC PENTACYSTEINE4 | ||||
| Refseq | XP_016169929.1 | 0.0 | protein BASIC PENTACYSTEINE4 | ||||
| Refseq | XP_016169930.1 | 0.0 | protein BASIC PENTACYSTEINE4 | ||||
| Refseq | XP_016169931.1 | 0.0 | protein BASIC PENTACYSTEINE4 | ||||
| Refseq | XP_016169932.1 | 0.0 | protein BASIC PENTACYSTEINE4 | ||||
| Refseq | XP_020965843.1 | 0.0 | protein BASIC PENTACYSTEINE4 | ||||
| Refseq | XP_020965844.1 | 0.0 | protein BASIC PENTACYSTEINE4 | ||||
| Refseq | XP_020965845.1 | 0.0 | protein BASIC PENTACYSTEINE4 | ||||
| Refseq | XP_025671874.1 | 0.0 | protein BASIC PENTACYSTEINE4 | ||||
| Refseq | XP_025671875.1 | 0.0 | protein BASIC PENTACYSTEINE4 | ||||
| Refseq | XP_025671876.1 | 0.0 | protein BASIC PENTACYSTEINE4 | ||||
| Refseq | XP_025671878.1 | 0.0 | protein BASIC PENTACYSTEINE4 | ||||
| Refseq | XP_029150994.1 | 0.0 | protein BASIC PENTACYSTEINE4 | ||||
| Swissprot | Q8S8C6 | 1e-117 | BPC4_ARATH; Protein BASIC PENTACYSTEINE4 | ||||
| TrEMBL | A0A445C1Y0 | 0.0 | A0A445C1Y0_ARAHY; Uncharacterized protein | ||||
| STRING | GLYMA08G01240.3 | 0.0 | (Glycine max) | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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