PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy016652
Organism
Arachis hypogaea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ARF
Protein Properties Length: 712aa    MW: 79345 Da    PI: 6.4445
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S59539913PU_refUnigeneView CDS
PUT-171a-Arachis_hypogaea-12598PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.56e-24124224198
                EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                f kvlt sd++++g +++ +k+a+e+     +++++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + +++el+v+
  Ahy016652 124 FSKVLTASDTSTHGGFSVLRKHATEClpaldMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFL--RGQNGELRVG 221
                88****************************977777888*************************************************..3489999*** PP

                EE- CS
         B3  96 vfr 98 
                v+r
  Ahy016652 222 VRR 224
                *98 PP
2Auxin_resp97.51.9e-32250331183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsse..rrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha++t++ F v+Y+Pr+  s+F+++++k+++a+++k+svGmRfkm+fe++ds    +r+sGt+vg++d++p +W+nSkWrsLk
   Ahy016652 250 ASHAVATQTLFVVYYKPRT--SQFIISLNKYLDAVNNKFSVGMRFKMRFEGDDSTDtdKRFSGTIVGLEDISP-HWENSKWRSLK 331
                 789***************6..9*******************************97522688**********99.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.42E-39115253IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.8E-40117239IPR015300DNA-binding pseudobarrel domain
CDDcd100171.07E-20122224No hitNo description
PfamPF023629.4E-22124224IPR003340B3 DNA binding domain
SMARTSM010196.5E-22124226IPR003340B3 DNA binding domain
PROSITE profilePS5086312.351124226IPR003340B3 DNA binding domain
PfamPF065072.1E-30250331IPR010525Auxin response factor
PfamPF023091.4E-6461637IPR033389AUX/IAA domain
SuperFamilySSF542771.18E-11601677No hitNo description
PROSITE profilePS5174523.482601682IPR000270PB1 domain
PfamPF023092.5E-6642685IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 712 aa     Download sequence    Send to blast
MMLNRGSNVS AEGGGDELYS QLWKACAGPL VDVPRVGERV FYFPQGHMEQ LEASTNQELN  60
QRIPLFKLPS KILCRVVNIH LLAEQETDEV YAQITLVPES NQADEPTSPD PSPAEPTRPT  120
VHSFSKVLTA SDTSTHGGFS VLRKHATECL PALDMSQPTP TQELVAKDLH GYEWRFKHIF  180
RGQPRRHLLT TGWSTFVTSK RLVAGDTFVF LRGQNGELRV GVRRLARQQS NMPSSVISSQ  240
SMHLGVLATA SHAVATQTLF VVYYKPRTSQ FIISLNKYLD AVNNKFSVGM RFKMRFEGDD  300
STDTDKRFSG TIVGLEDISP HWENSKWRSL KVQWDEPAAV PRPDRVSPWE MEPYVAPALT  360
SSVQPAVVKA KRPRPPSEHP DLDTQSAASV FWDSGLTQAD MTQHSVYPMA TSVFWDSGLT  420
QADMTQHSVM AESKRSDTTS VWHHKQIDMN SKSNSNLMSR NQTEGSWLSS PHSSCPSQLF  480
QDTMDDSKSV SAWPAPNPHS SRLNNDHVHD QVDKENKAET ATSCRLFGID LIDHSRNSSA  540
VEKAAAQAVN VHSFTSEGCV STVSKTEAGQ KSDASKTGKE KKQEQQQVSP KESQSKQICS  600
RSRTKVQMQG VAVGRAVDLT MLDGYEHLIV ELEELFDIKG QLQDRNKWEI VFTDDEGDMM  660
LVGDDPWPEF CHMVRRIFIC SSQDVKKMST GSKLPISSIE EGTVISSETA ET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-170103538354Auxin response factor 1
4ldw_A1e-170103538354Auxin response factor 1
4ldw_B1e-170103538354Auxin response factor 1
4ldx_A1e-170103538354Auxin response factor 1
4ldx_B1e-170103538354Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1370374KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025633467.10.0auxin response factor 9
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A445AJ590.0A0A445AJ59_ARAHY; Auxin-induced protein
STRINGGLYMA03G17450.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9