PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy016901

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

GRF

Protein Properties

Length: 215aa MW: 23672 Da PI: 10.4934

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S59547510	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.8	1e-24	128	171	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+++ ++k+CErH++rgr+rsrk++e Ahy016901 128 DPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVE 171 79***************************************998 PP
2	QLQ	64.3	3.2e-22	62	98	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +aFT++Q+++L++Q+l+yKy+ an+PvP++Ll +i+k Ahy016901 62 GAFTPSQWMELEQQALIYKYITANVPVPSHLLIPIKK 98 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	3.9E-13	62	98	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	5.4E-16	63	96	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	23.737	63	98	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.847	128	172	IPR014977	WRC domain
Pfam	PF08879	2.8E-21	129	171	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
XSSSLLRSNA TLFSDVSGNQ QQQQMLSFSS PYHYLPLSRN TGCHSWGSNS MHGNGNGIGM 60 RGAFTPSQWM ELEQQALIYK YITANVPVPS HLLIPIKKAL HSAGFSHFFR PSAVGWAGFH 120 LGFSNSTDPE PGRCRRTDGK KWRCSRDAVV DQKYCERHMN RGRHRSRKPV EGHNGHALTG 180 TTTSSTTKNV VPGNTPPPPP SNTLTYSSPP NTISX

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000269\|PubMed:12974814, ECO:0000269\|PubMed:15326298, ECO:0000269\|PubMed:20023165, ECO:0000269\|PubMed:21036927}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503, ECO:0000269\|PubMed:20023165}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015935173.1	1e-156	growth-regulating factor 1
Refseq	XP_025613484.1	1e-156	growth-regulating factor 1
Swissprot	Q8L8A8	4e-56	GRF2_ARATH; Growth-regulating factor 2
TrEMBL	A0A445BUL9	1e-155	A0A445BUL9_ARAHY; Uncharacterized protein
STRING	GLYMA17G35100.2	4e-82	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	9e-57	growth-regulating factor 2

Publications ? help Back to Top
Casadevall R,Rodriguez RE,Debernardi JM,Palatnik JF,Casati P Repression of growth regulating factors by the microRNA396 inhibits cell proliferation by UV-B radiation in Arabidopsis leaves. Plant Cell, 2013. 25(9): p. 3570-83 [PMID:24076976] Liu J,Rice JH,Chen N,Baum TJ,Hewezi T Synchronization of developmental processes and defense signaling by growth regulating transcription factors. PLoS ONE, 2014. 9(5): p. e98477 [PMID:24875638] Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]