PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy016943
Organism
Arachis hypogaea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 345aa    MW: 35609.9 Da    PI: 8.5971
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S59542853PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.63.2e-11224527
               --SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
               +C+++ +tG+Ck+G++CkF+H++
  Ahy016943  2 ECSYYVKTGQCKFGATCKFHHPQ 24
               7********************97 PP
2zf-CCCH391.4e-12166190226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                ++++C+++++tG+Ck+G++C+++H+
  Ahy016943 166 DQPECQYYMKTGECKFGPSCRYHHP 190
                689*********************8 PP
3zf-CCCH31.82.3e-10213237327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 ++C ++ + G+Ck+G+ CkF H++
  Ahy016943 213 APPCTHYTQRGICKFGPACKFDHPM 237
                689********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.07125IPR000571Zinc finger, CCCH-type
SMARTSM003560.017124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5225IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8224IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4323IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-6164191IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.23164192IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-10166190IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-6167191IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-5170194IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-6210237IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.737210238IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-8213237IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-6214240IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4215235IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
KECSYYVKTG QCKFGATCKF HHPQPAGVQI PAPSPVPPVS PLPVQVPSPL YPTVQPPSGP  60
SQQQYSVLVA RPPLLPGSLV QGPYGPVVVS PAMVPFPGWN PYQAQATSPL LPSSTPSNVG  120
PTQLYRITQL PSQATGYSAP YQPSGPSVDP SGSSTQKENP YPERPDQPEC QYYMKTGECK  180
FGPSCRYHHP SDLNAPKGNV ALSPVGLPLR PGAPPCTHYT QRGICKFGPA CKFDHPMGSL  240
SYSPSASSLA DMPVAPYPVG SSMGTLAPSS SSSELRPELA SGLSKESVSS RMSSSMSTSS  300
GSVGLTLSTA GPISQSGTQP SAQSSSSSAT ASSAATSSAA SHTSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025630067.10.0zinc finger CCCH domain-containing protein 34
SwissprotQ84W912e-90C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A445AWX30.0A0A445AWX3_ARAHY; Uncharacterized protein
STRINGGLYMA17G02720.31e-145(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.33e-67C3H family protein