PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy017041

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

ARF

Protein Properties

Length: 511aa MW: 55773.8 Da PI: 6.8268

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S59545152	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	78	9.9e-25	157	258	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + +++el++ Ahy017041 157 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RGDDGELRL 253 99**************************963.3445679********************************************..3489999 PP EEE-S CS B3 95 kvfrk 99 +++r+ Ahy017041 254 GIRRA 258 **996 PP
2	Auxin_resp	110.4	1.8e-36	284	364	2	82
Auxin_resp 2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 ++a+s++s+F+v+YnPr+s+ eF+++ +k++k+l+ +svGmRf+m+feted++err++G+++g+ d+dpvrWp+SkWr+L Ahy017041 284 INALSSRSAFSVCYNPRVSSKEFIIPPHKFLKSLDFCYSVGMRFQMRFETEDAAERRFTGLIAGIGDADPVRWPGSKWRCL 364 6899****************************************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	5.23E-43	150	263	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	3.0E-40	152	259	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.97E-23	155	257	No hit	No description
PROSITE profile	PS50863	13.394	157	259	IPR003340	B3 DNA binding domain
Pfam	PF02362	7.7E-23	157	258	IPR003340	B3 DNA binding domain
SMART	SM01019	3.4E-23	157	259	IPR003340	B3 DNA binding domain
Pfam	PF06507	4.0E-32	285	364	IPR010525	Auxin response factor

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009725	Biological Process	response to hormone
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence Send to blast
MGLIDLNTTE EDEAQTPSSA STGSASSPSH SGISTSASAL APPSSSSSVC LELWHACAGP 60 MISLPKKGSV VVYLPQGHFE QAQDFPVTAY NIPPHVCCRV LDVKLHAEEG SDEVYCQVLL 120 VPESEQVEKN LRHGVVDVDG EEDDTEAVVK STTPHMFCKT LTASDTSTHG GFSVPRRAAE 180 DCFPPLDYSQ QRPSQELVAK DLHGLEWRFR HIYRGQPRRH LLTTGWSAFV NKKKLVSGDA 240 VLFLRGDDGE LRLGIRRAAQ LKNGGIFATP SIQQLNPGSV MNIINALSSR SAFSVCYNPR 300 VSSKEFIIPP HKFLKSLDFC YSVGMRFQMR FETEDAAERR FTGLIAGIGD ADPVRWPGSK 360 WRCLLVRWDD VEASRHNRVS PWEIEPSGPA PTSNNLMAAG LKRSRIGSSG KLEFPLPNGI 420 GTSDFGESLR FRKVLQGQEI LGVNTPFDGI NSQSPRLSEL GRCYPGSIGS GTSVVGSNIR 480 IPQAGSDFSY NNGTGFGESF RFQKVLQGQE I

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence Send to blast

MGLIDLNTTE EDEAQTPSSA STGSASSPSH SGISTSASAL APPSSSSSVC LELWHACAGP  60
MISLPKKGSV VVYLPQGHFE QAQDFPVTAY NIPPHVCCRV LDVKLHAEEG SDEVYCQVLL  120
VPESEQVEKN LRHGVVDVDG EEDDTEAVVK STTPHMFCKT LTASDTSTHG GFSVPRRAAE  180
DCFPPLDYSQ QRPSQELVAK DLHGLEWRFR HIYRGQPRRH LLTTGWSAFV NKKKLVSGDA  240
VLFLRGDDGE LRLGIRRAAQ LKNGGIFATP SIQQLNPGSV MNIINALSSR SAFSVCYNPR  300
VSSKEFIIPP HKFLKSLDFC YSVGMRFQMR FETEDAAERR FTGLIAGIGD ADPVRWPGSK  360
WRCLLVRWDD VEASRHNRVS PWEIEPSGPA PTSNNLMAAG LKRSRIGSSG KLEFPLPNGI  420
GTSDFGESLR FRKVLQGQEI LGVNTPFDGI NSQSPRLSEL GRCYPGSIGS GTSVVGSNIR  480
IPQAGSDFSY NNGTGFGESF RFQKVLQGQE I

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ldv_A	1e-112	46	386	16	354	Auxin response factor 1
4ldw_A	1e-112	46	386	16	354	Auxin response factor 1
4ldw_B	1e-112	46	386	16	354	Auxin response factor 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in the establishment or elaboration of tissue patterning during gynoecial development. {ECO:0000269\|PubMed:10952886, ECO:0000269\|PubMed:12036261}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by AHL21/GIK. {ECO:0000269\|PubMed:19956801}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025621930.1	0.0	auxin response factor 3
Swissprot	O23661	0.0	ARFC_ARATH; Auxin response factor 3
TrEMBL	A0A445BBP8	0.0	A0A445BBP8_ARAHY; Auxin response factor
STRING	GLYMA13G30750.1	0.0	(Glycine max)

Publications ? help Back to Top
Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors. Mol. Gen. Mikrobiol. Virusol., 2013. [PMID:24003511] Thoma R,Chandler JW Polarity in the early floral meristem of Arabidopsis. Plant Signal Behav, 2015. 10(4): p. e992733 [PMID:25806573] Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442] Cabrera J, et al. Differentially expressed small RNAs in Arabidopsis galls formed by Meloidogyne javanica: a functional role for miR390 and its TAS3-derived tasiRNAs. New Phytol., 2016. 209(4): p. 1625-40 [PMID:26542733] Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551] Yamaguchi N,Wu MF,Winter CM,Wagner D LEAFY and Polar Auxin Transport Coordinately Regulate Arabidopsis Flower Development. Plants (Basel), 2014. 3(2): p. 251-65 [PMID:27135503] Matsumura Y, et al. A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis. Biol Open, 2016. 5(7): p. 942-54 [PMID:27334696] Simonini S, et al. A noncanonical auxin-sensing mechanism is required for organ morphogenesis in Arabidopsis. Genes Dev., 2016. 30(20): p. 2286-2296 [PMID:27898393] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Wójcikowska B,Gaj MD Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis. Plant Cell Rep., 2017. 36(6): p. 843-858 [PMID:28255787] Su Z, et al. The THO Complex Non-Cell-Autonomously Represses Female Germline Specification through the TAS3-ARF3 Module. Curr. Biol., 2017. 27(11): p. 1597-1609.e2 [PMID:28552357] Simonini S,Bencivenga S,Trick M,Østergaard L Auxin-Induced Modulation of ETTIN Activity Orchestrates Gene Expression in Arabidopsis. Plant Cell, 2017. 29(8): p. 1864-1882 [PMID:28804059] Guan C, et al. Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis. Curr. Biol., 2017. 27(19): p. 2940-2950.e4 [PMID:28943086] Simonini S, et al. Corrigendum: A noncanonical auxin-sensing mechanism is required for organ morphogenesis in Arabidopsis. Genes Dev., 2017. 31(17): p. 1821 [PMID:28982764] Zhang K, et al. AUXIN RESPONSE FACTOR3 Regulates Floral Meristem Determinacy by Repressing Cytokinin Biosynthesis and Signaling. Plant Cell, 2018. 30(2): p. 324-346 [PMID:29371438] Vial-Pradel S, et al. Arabidopsis Zinc-Finger-Like Protein ASYMMETRIC LEAVES2 (AS2) and Two Nucleolar Proteins Maintain Gene Body DNA Methylation in the Leaf Polarity Gene ETTIN (ARF3). Plant Cell Physiol., 2018. 59(7): p. 1385-1397 [PMID:29415182] Simonini S,Stephenson P,Østergaard L A molecular framework controlling style morphology in Brassicaceae. Development, 2018. [PMID:29440299] Andres-Robin A, et al. Evidence for the Regulation of Gynoecium Morphogenesis by ETTIN via Cell Wall Dynamics. Plant Physiol., 2018. 178(3): p. 1222-1232 [PMID:30237208] Hablak SG Features inheritance of root system Arabidopsis thaliana (L.) Heynh. the interaction of genes CTR1 AND ALF3, NPH4 and IAR2. Tsitol. Genet., 2019. [PMID:30484609]