PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy017682
Organism
Arachis hypogaea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 577aa    MW: 62839.9 Da    PI: 9.0184
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S59543078PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.11.9e-10179203226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                +++ C ++++ G Ck+G++Ck++H+
  Ahy017682 179 GEKDCAYYMQHGSCKFGENCKYNHP 203
                7889********************9 PP
2zf-CCCH18.34.2e-06516538426
                ---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                + C+ +   G+Ck+G+ CkFaH+
  Ahy017682 516 SACPEYTCLGICKFGAGCKFAHP 538
                679999999*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.2E-5177204IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.713177205IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-8179203IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-6180205IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.943512540IPR000571Zinc finger, CCCH-type
SMARTSM003560.63513539IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MGNLQTKWAA STVQPAESNS ASSSSSLFTN GSGQQQPPQP PRAPLSSPSD HHQTSQEGAL  60
CGDLKGKLEL KGEGRVGVEA LDQVLNFGQQ GVNGDDRDIE GSKRNSWEDD YVNGSVYDGN  120
CVGAEKRKKR GAGRQTKVAK EQSQERQEPS ERSGQTECKY YPSLPAAELN FLDLPIRPGE  180
KDCAYYMQHG SCKFGENCKY NHPDPTTGGC DPPPMYDNVG SISFSGVLQQ SASSVSSPGI  240
VNKTSPFLPM MLSPTQVSPQ DSDWNAYHYQ APICPYVMSM HPPTHVKNYP AIETNAYTPQ  300
QNQIQVGVDE FAEIPGDSKP KSKRKSYCKK NKLASLPPCN PCNLNDKGLL LRPAPICPST  360
MSMHPPKYVM NNSTIKTNAY TPRQKQIQDG VDEFAKIPED SKSKSKGKSR RQKNKLANLP  420
PSTLNDKGLL LRPAPIKPSV MGIHPPTHVM NNPAIKTKAS TPRQKQMQVG VDELAEIPGD  480
SKSKSKRKSH HQKNKLASVP PCTLNNKGLP LKPDKSACPE YTCLGICKFG AGCKFAHPSN  540
PPPPLTIHSV YQQSYTNSAG VEVAWMGSSD PTIQQTL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1485489KRKSH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015965535.10.0zinc finger CCCH domain-containing protein 43
RefseqXP_025703329.10.0zinc finger CCCH domain-containing protein 43
TrEMBLA0A445ER660.0A0A445ER66_ARAHY; Uncharacterized protein
STRINGXP_007155512.16e-57(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.19e-26C3H family protein