PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy017945

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

HB-other

Protein Properties

Length: 227aa MW: 25147.4 Da PI: 6.6063

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S59551548	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	69.6	3.7e-22	125	180	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL rqVk+WFqNrR++ k Ahy017945 125 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 180 7999************************************************9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.92E-21	112	183	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.2E-23	112	176	IPR009057	Homeodomain-like
PROSITE profile	PS50071	18.22	122	182	IPR001356	Homeobox domain
SMART	SM00389	8.3E-19	124	186	IPR001356	Homeobox domain
Pfam	PF00046	1.7E-19	125	180	IPR001356	Homeobox domain
CDD	cd00086	8.76E-17	129	180	No hit	No description
PRINTS	PR00031	2.7E-5	153	162	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	157	180	IPR017970	Homeobox, conserved site
PRINTS	PR00031	2.7E-5	162	178	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MAADMSNTNT NTNNNNNNHP SHAKDFFASP ALSLSLAGIF RHAGVAAAEG EAATSNMEVE 60 DGDEGSGGGG GAGHTVDISS ENSGPTRSRS EDDYFEGEGE HEDEDILGDD NNNNNNNKNK 120 NKKKRKKYHR HTAEQIREME ALFKESPHPD EKQRQQLSKQ LGLAPRQVKF WFQNRRTQIK 180 AIQERHENSL LKTEIEKLKE KNKGLRETIN KACCPNCGVA TTSTRDG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	126	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269\|PubMed:11844112}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by GEM. {ECO:0000269\|PubMed:17450124}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025611006.1	1e-163	homeobox-leucine zipper protein GLABRA 2
Refseq	XP_025673300.1	1e-163	homeobox-leucine zipper protein GLABRA 2
Swissprot	P46607	1e-69	HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBL	A0A444Y9A4	1e-161	A0A444Y9A4_ARAHY; Uncharacterized protein
STRING	GLYMA15G01960.1	3e-90	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79840.1	6e-51	HD-ZIP family protein

Publications ? help Back to Top
Wu R,Citovsky V Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development. Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553 [PMID:28526410]