PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy018625

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

WOX

Protein Properties

Length: 272aa MW: 30878.4 Da PI: 6.7938

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S59558856	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.9	2.7e-21	87	147	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + + +ps+e+++e++++l +++e++V++WFqNrRa+ k+ Ahy018625 87 RQRWTPTSVQLQILERIFDQgTGTPSKEKIKEITAELskhgQISETNVYNWFQNRRARSKR 147 89***************99************************************97 PP
2	Wus_type_Homeobox	103.4	1.5e-33	86	149	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPt+ Q++iLe+++++G+ tP+ke+i++itaeL+++G+i+++NV++WFQNr+aR+++kq Ahy018625 86 SRQRWTPTSVQLQILERIFDQGTGTPSKEKIKEITAELSKHGQISETNVYNWFQNRRARSKRKQ 149 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.6E-17	81	152	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.965	83	148	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.27E-18	85	151	IPR009057	Homeodomain-like
SMART	SM00389	2.3E-14	85	152	IPR001356	Homeobox domain
Pfam	PF00046	3.4E-19	87	147	IPR001356	Homeobox domain
CDD	cd00086	1.54E-13	87	149	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MEWPKQQQQN QNQQRNVIAG EIMYVKVMTD EQLETLRKQI AVYATICEKL IEMHKTLSAQ 60 QDLAGIRLGS MYCDPLMASS GHKITSRQRW TPTSVQLQIL ERIFDQGTGT PSKEKIKEIT 120 AELSKHGQIS ETNVYNWFQN RRARSKRKQQ NVAASNNTNT NTESEVETEV DSKDKKTKPE 180 EFQSQQSLAN VAAQNVCFHN RDLPYLNPES NKSDSIFPSD GSLTSTSNFD HMPVFNGMIA 240 NSRSDYLAGK IKMEAPDSYN IYHEGGDYNI TG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	140	148	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025622834.1	0.0	WUSCHEL-related homeobox 13
Refseq	XP_025622835.1	0.0	WUSCHEL-related homeobox 13
Swissprot	O81788	3e-82	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	A0A445B8F4	0.0	A0A445B8F4_ARAHY; Uncharacterized protein
STRING	GLYMA18G52491.1	1e-137	(Glycine max)

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]