PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy018675
Organism
Arachis hypogaea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 352aa    MW: 38119.1 Da    PI: 8.331
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S59544390PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.41.2e-08153173526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 C+++ + G C++G+rCkF H+
  Ahy018675 153 VCNYWIQ-GNCNFGERCKFLHS 173
                6******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.1226288IPR000571Zinc finger, CCCH-type
SMARTSM003560.466287IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.699148175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-7149173IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-6150174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-7152172IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-5153173IPR000571Zinc finger, CCCH-type
SuperFamilySSF509782.93E-35171352IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.109.2E-33173352IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.3E-5179218IPR001680WD40 repeat
PfamPF004001.4E-4183218IPR001680WD40 repeat
PROSITE profilePS5008214.986186227IPR001680WD40 repeat
PROSITE profilePS5029419.776186352IPR017986WD40-repeat-containing domain
PRINTSPR003207.9E-6205219IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780205219IPR019775WD40 repeat, conserved site
SMARTSM003200.46258295IPR001680WD40 repeat
PRINTSPR003207.9E-6282296IPR020472G-protein beta WD-40 repeat
SMARTSM003202.2E-4302339IPR001680WD40 repeat
PfamPF004000.0013306339IPR001680WD40 repeat
PROSITE profilePS5008213.182309348IPR001680WD40 repeat
PROSITE patternPS006780326340IPR019775WD40 repeat, conserved site
PRINTSPR003207.9E-6326340IPR020472G-protein beta WD-40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
FFLLIAAKAT VFQPLSCDTL PISTPQIRKT SEPIQCLCFG SMDLDGGNKR VYQRLGGPSG  60
DSKHQKVCYH WQAGKCNRHP CPFLHSELPT PNVNGTSSKR PHGSADNSGF SGHRRNPHFN  120
NTWGRGGGRG GGRGASGGVV GGDMSVVRKA DKVCNYWIQG NCNFGERCKF LHSWNTGDGF  180
SMLTQLEGHQ KVVSGIAFPS GSDKLYTGST DESVRVWDCQ SGKCVAVINL GGEVGCMISE  240
GPWVFVGIPN FVKVWNTQNS MELSLNGPVG QVYALVVNND MLFAGTQDGS ILVWKFNVVA  300
NCFEPAASLK GHTRGVVSLV VGANRLYSGS MDNTIRVWNL ENLECLQTLT DH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ovp_B7e-16165352172355F-box/WD repeat protein 7
2ovq_B7e-16165352172355F-box/WD repeat protein 7
2ovr_B7e-16165352172355F-box/WD repeat protein 7
5v4b_B6e-16169352172355F-box/WD repeat-containing protein 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124132RGGGRGGGR
2124133RGGGRGGGRG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016204172.10.0zinc finger CCCH domain-containing protein 48 isoform X1
RefseqXP_025656709.10.0zinc finger CCCH domain-containing protein 48 isoform X1
SwissprotQ9FNZ21e-141C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A444YY950.0A0A444YY95_ARAHY; Uncharacterized protein
STRINGGLYMA09G27300.11e-172(Glycine max)
STRINGGLYMA16G32370.11e-172(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.11e-139zinc finger WD40 repeat protein 1