PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy018720
Organism
Arachis hypogaea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 440aa    MW: 50897.6 Da    PI: 10.297
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S58465519PU_refUnigeneView CDS
PUT-171a-Arachis_hypogaea-13741PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.92.7e-11124198986
                HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
         B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                ++l+++r  +  +f  ++ ++ke++++++    +g+ W  kl       + ++++GW+ F  +n+Lk+gD++vF+l++
  Ahy018720 124 SNLQRSRANFKASFYIKYFENKEQNVEIR---YQGKLWPAKLLCYPAAAAAYISNGWRPFSLENDLKVGDVCVFELIN 198
                55666777788899999988889988887...799*******88999999*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.6E-17109208IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-15110200IPR015300DNA-binding pseudobarrel domain
CDDcd100171.42E-10115200No hitNo description
SMARTSM010198.5E-5117210IPR003340B3 DNA binding domain
PfamPF023628.7E-9125198IPR003340B3 DNA binding domain
PROSITE profilePS508639.939154212IPR003340B3 DNA binding domain
SuperFamilySSF501041.17E-9321440IPR008991Translation protein SH3-like domain
Gene3DG3DSA:2.30.30.308.2E-12322417IPR014722Ribosomal protein L2 domain 2
CDDcd060901.80E-37323393No hitNo description
PfamPF017778.5E-30357440IPR001141Ribosomal protein L27e
ProDomPD0093963.0E-31365440IPR001141Ribosomal protein L27e
PROSITE patternPS011070429440IPR018262Ribosomal protein L27e, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0005840Cellular Componentribosome
GO:0003677Molecular FunctionDNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
XEVHIFDMSG LEIHYPFNNR IDNDSVETLN ELPPQCWGRE QKRLKTPLSL SLPFTSKQLR  60
IATETRDVEG GSQSEEKNIE MPIIPSVIHR SDVFEPGTCG FRCLEEAQKF NSENPSFMIK  120
LGKSNLQRSR ANFKASFYIK YFENKEQNVE IRYQGKLWPA KLLCYPAAAA AYISNGWRPF  180
SLENDLKVGD VCVFELINGE IPVLDAHIYE PMVKQFIRTS GALKPSNLVN MYTYFVKLKF  240
YYGQSLLKYC LLFYHLSEDV ALIFPRTKTK KKKKKKDRLE PKGFEFKPFR FQQAVVSTQS  300
GHYSRGGVVL ETKQSGYRAA RPYAGRKAVI IRAFDDGTRD RPYGHCLVAG IKKYPSKVVK  360
RDSAKKTAKK SRVKAFVKMV NYQHVMPTRY TLDVDLKDAV TVESLQSKDK KVAALKETKK  420
RLEERFRTGK NRWFFTKLRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4v7e_CZ6e-563234401813660S ribosomal protein L27E
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1269275KKKKKKK
2409420KKVAALKETKKR