PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy018860

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C3H

Protein Properties

Length: 422aa MW: 46340.4 Da PI: 7.2921

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S59551473	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30.1	8.3e-10	48	73	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +f+rtG C yG +C+++H+ Ahy018860 48 PGEPDCLYFLRTGMCGYGTNCRYNHP 73 5789*********************8 PP
2	zf-CCCH	38.1	2.6e-12	91	116	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +f++tGtCkyG++Ck++H++ Ahy018860 91 GQPDCEYFLKTGTCKYGSSCKYHHPR 116 5799********************96 PP
3	zf-CCCH	38.2	2.5e-12	139	161	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++++rtG Ck+G CkF+H+p Ahy018860 139 SCPYYMRTGSCKFGVACKFHHPP 161 6********************97 PP
4	zf-CCCH	41.8	1.7e-13	268	293	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+++ tGtCkyG+ CkF+H++ Ahy018860 268 DQPECRYYMNTGTCKYGSDCKFHHPK 293 689*********************96 PP
5	zf-CCCH	35.9	1.3e-11	310	335	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++ +G+CkyG++CkF H+ Ahy018860 310 PGQAICSYYRIYGICKYGPTCKFDHP 335 5789*********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.591	47	75	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.4E-5	47	74	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.0E-6	49	73	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.15E-5	52	74	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	8.4E-4	53	73	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.126	89	117	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.7E-7	89	116	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.8E-10	91	116	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.83E-6	94	118	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.7E-5	95	116	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.92E-6	133	162	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.901	134	162	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.0E-5	136	161	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.0E-10	138	161	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.2E-4	139	160	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.4E-6	266	293	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.605	266	294	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	9.9E-11	268	293	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.84E-7	270	295	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.9E-6	272	293	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.44E-5	307	335	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.582	309	337	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.2E-6	309	336	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.4E-9	311	335	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.1E-4	314	334	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence Send to blast
MPENRQVLRN AASNQSGDNI EEAIRRLKIN DNRDRDTAGQ TSPYPDRPGE PDCLYFLRTG 60 MCGYGTNCRY NHPANVSLGT HYGEELPERN GQPDCEYFLK TGTCKYGSSC KYHHPRDRRG 120 AAPVSFNALG LPMRQEEKSC PYYMRTGSCK FGVACKFHHP PHATFGASGV AASPTSMIPT 180 SGYVGGYPYS LPRMPYLSGQ GLQSYVPPFF SSPQGIIPGQ GWNSYMGSMN PAMSTGFLGS 240 NLVYDSVNPG ESLSGGQVVS LNLPDRPDQP ECRYYMNTGT CKYGSDCKFH HPKERIAQSF 300 INPLGLPVRP GQAICSYYRI YGICKYGPTC KFDHPVLAIS QNYRLATPTA LSALDTPLDG 360 NRRGTFQPPE TSPSKLSSDE HQHSDNNINN SQAAEDSSKQ ADHTTSNSFE VASESSLHDQ 420 DA

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence Send to blast

MPENRQVLRN AASNQSGDNI EEAIRRLKIN DNRDRDTAGQ TSPYPDRPGE PDCLYFLRTG  60
MCGYGTNCRY NHPANVSLGT HYGEELPERN GQPDCEYFLK TGTCKYGSSC KYHHPRDRRG  120
AAPVSFNALG LPMRQEEKSC PYYMRTGSCK FGVACKFHHP PHATFGASGV AASPTSMIPT  180
SGYVGGYPYS LPRMPYLSGQ GLQSYVPPFF SSPQGIIPGQ GWNSYMGSMN PAMSTGFLGS  240
NLVYDSVNPG ESLSGGQVVS LNLPDRPDQP ECRYYMNTGT CKYGSDCKFH HPKERIAQSF  300
INPLGLPVRP GQAICSYYRI YGICKYGPTC KFDHPVLAIS QNYRLATPTA LSALDTPLDG  360
NRRGTFQPPE TSPSKLSSDE HQHSDNNINN SQAAEDSSKQ ADHTTSNSFE VASESSLHDQ  420
DA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015973683.1	0.0	zinc finger CCCH domain-containing protein 3 isoform X1
Refseq	XP_025609024.1	0.0	zinc finger CCCH domain-containing protein 3 isoform X1
TrEMBL	A0A445C4N0	0.0	A0A445C4N0_ARAHY; Uncharacterized protein
STRING	XP_007141660.1	0.0	(Phaseolus vulgaris)