PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy018970
Organism
Arachis hypogaea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 139aa    MW: 15850.4 Da    PI: 8.8659
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S58453352PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.87.4e-2268138167
                EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHH CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWke 67 
                f+kv tpsdv+k++rlv+pk++ae++    + ++e++  l +ed++g+ W+++++y+++s++yv+tkGW++
  Ahy018970  68 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSTSNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSR 138
                89***************************955567889*******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.2E-3161138IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-2264138IPR015300DNA-binding pseudobarrel domain
CDDcd100172.12E-1866138No hitNo description
PfamPF023623.6E-1968138IPR003340B3 DNA binding domain
PROSITE profilePS5086310.85668139IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MNQNQPQPQP QQLVDFMDLS LGTNINHHEG INNFQGYSSS SAAATTTTTN NTNLQPPLPA  60
PAEKEHMFDK VVTPSDVGKL NRLVIPKQHA EKYFPLDSTS NEKGLLLNFE DRNGKLWRFR  120
YSYWNSSQSY VMTKGWSRX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-4762138278B3 domain-containing transcription factor NGA1
5os9_B1e-4762138278B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015948137.11e-96B3 domain-containing protein Os03g0120900
RefseqXP_020990491.11e-96B3 domain-containing protein Os03g0120900
RefseqXP_025639904.11e-96B3 domain-containing transcription factor NGA3
SwissprotQ7F9W22e-48Y4814_ORYSJ; B3 domain-containing protein Os04g0581400
TrEMBLA0A445EHK79e-85A0A445EHK7_ARAHY; Uncharacterized protein
STRINGGLYMA16G01951.19e-52(Glycine max)
STRINGXP_007135337.13e-52(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.11e-47B3 family protein
Publications ? help Back to Top
  1. Je BI, et al.
    RAV-Like1 maintains brassinosteroid homeostasis via the coordinated activation of BRI1 and biosynthetic genes in rice.
    Plant Cell, 2010. 22(6): p. 1777-91
    [PMID:20581303]