PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy019279

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

MYB_related

Protein Properties

Length: 317aa MW: 34275.3 Da PI: 10.1037

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S58471615	PU_unref	Unigene	View CDS
gnl\|UG\|Ahy#S59550244	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.2	6e-11	5	55	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v ++G g W+tI R+ ++k++w++ Ahy019279 5 KQKWTAEEEAALKAGVVKHGAGKWRTILTDPEfsailRMRSNVDLKDKWRN 55 79*********************************9*********99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.774	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	9.36E-15	2	65	IPR009057	Homeodomain-like
SMART	SM00717	4.1E-5	4	59	IPR001005	SANT/Myb domain
Pfam	PF00249	3.2E-7	5	55	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-12	5	56	IPR009057	Homeodomain-like
CDD	cd11660	1.47E-17	6	57	No hit	No description
SMART	SM00526	1.5E-15	124	189	IPR005818	Linker histone H1/H5, domain H15
PROSITE profile	PS51504	24.451	126	194	IPR005818	Linker histone H1/H5, domain H15
SuperFamily	SSF46785	1.47E-16	129	203	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	5.5E-16	130	193	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00538	5.5E-11	132	187	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MGAPKQKWTA EEEAALKAGV VKHGAGKWRT ILTDPEFSAI LRMRSNVDLK DKWRNINVTA 60 IWGSRQKAKL ALKKNLPIPK IDCNHMAIST VVQRDEVADY KPLAISGGAS QSANSKEHIS 120 SNMRFDSGRL DTLILESIIK LKEPKGSDRA AIAAYIEDQY SCPPNLRKLL SAKLKHMVAS 180 GKLMKVKHKY RITGNSTISE KRRGSSLLLL EGRPKDSPKS EKTDVSLLSK SQIDAELSKM 240 KGVTAQEAAA XAAAKAVAEA EVAIAEAEAA AREAEAAEAE AEAARVFAKA AMKALKCKGF 300 ISDGDNSDMV EMSSILA

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016201623.1	0.0	telomere repeat-binding factor 2 isoform X2
Refseq	XP_025652275.1	0.0	telomere repeat-binding factor 2 isoform X2
Refseq	XP_025698551.1	0.0	telomere repeat-binding factor 2 isoform X2
Swissprot	Q9FJW5	1e-75	TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBL	A0A444WUA6	1e-178	A0A444WUA6_ARAHY; Uncharacterized protein
TrEMBL	A0A444ZAM7	1e-179	A0A444ZAM7_ARAHY; Uncharacterized protein
STRING	XP_007156706.1	1e-143	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49950.3	1e-72	telomere repeat binding factor 1

Publications ? help Back to Top
Lee WK,Cho MH Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana. Nucleic Acids Res., 2016. 44(10): p. 4610-24 [PMID:26857545] Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]