PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy019376
Organism
Arachis hypogaea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 453aa    MW: 47308.7 Da    PI: 8.5967
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S59545966PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.12.5e-121237227
               -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
               +++ C +++rtG+C yG+rC+F+H++
  Ahy019376 12 DEADCIYYLRTGFCGYGSRCRFNHPR 37
               6799********************96 PP
2zf-CCCH33.95.5e-11106131227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                ++++C+++ +tG Ck+G++CkF+H++
  Ahy019376 106 GEKECSYYVKTGRCKFGGTCKFHHPQ 131
                7899********************97 PP
3zf-CCCH34.34.1e-11272297227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                ++++C+++++tG+Ck+G+ C+++H+p
  Ahy019376 272 DQPECQHYLKTGECKFGPLCRYHHPP 297
                689*********************97 PP
4zf-CCCH29.21.5e-09320343427
                ---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                ++C ++ + G Ck+G+ C+F H++
  Ahy019376 320 SPCTHYTQRGVCKFGSACRFDHPM 343
                79********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.2951038IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-51037IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.27E-61239IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-101237IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-61637IPR000571Zinc finger, CCCH-type
SMARTSM00356255785IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.5165786IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.784104132IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-5104131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6106132IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-8106131IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-5270297IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.957270298IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-8272297IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-5274298IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.8E-4276296IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-4316343IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.042316344IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-6319346IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-7320343IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-5321341IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
GAAEESYPQR PDEADCIYYL RTGFCGYGSR CRFNHPRDRA AAVGAAARTG GGEYPERIGQ  60
PLCQYYMKTG GHXKFDSSFK YRHPRQAGGS ATPVSLNYYG YPLRPGEKEC SYYVKTGRCK  120
FGGTCKFHHP QPAGIQVPAS SLVPPVSPLP VPVPSPLYQS VQPPSGPSSQ QIGVLVARPP  180
LLPGSLVHSP YGPVVLSPAM VPFSGWGPYQ APAASPVLPS STPTNVGSAQ LYGITQVPSS  240
PAAYAGPYQP SGSSLGLSGS SQKEQSLPER PDQPECQHYL KTGECKFGPL CRYHHPPDMS  300
APKGNVILSP AGLPLRPGAS PCTHYTQRGV CKFGSACRFD HPMGSLSYSP STSSLADMPV  360
APYPVGSSVG TLALSSSTSE LRPELTSGSI KESVSSRIPS SMNTLTGSVG LTLSTGEPVS  420
QSSSQPSAQS SSTSAAADTA TTSTVSCTTS SSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015942887.10.0zinc finger CCCH domain-containing protein 58
RefseqXP_025621662.10.0zinc finger CCCH domain-containing protein 58
SwissprotQ6NPN31e-137C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A445BCG60.0A0A445BCG6_ARAHY; Uncharacterized protein
STRINGGLYMA17G02720.30.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-118C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]