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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Ahy019720 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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| Family | ARF | ||||||||
| Protein Properties | Length: 754aa MW: 83933.4 Da PI: 7.7146 | ||||||||
| Description | ARF family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 72.7 | 4.6e-23 | 315 | 416 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
f+k+lt sd++++g +++ +++a+e+ + k++ +++l+ +d++ ++W++++i+r++++r++l++GW+ Fv++++L +gD ++F + +++el+v
Ahy019720 315 FCKTLTASDTSTHGGFSVLRRHADEClppldmS-KQPPTQELVAKDLHANEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGENGELRV 411
99*****************************63.4445569************************************************..449999*** PP
EEE-S CS
B3 95 kvfrk 99
+v+r+
Ahy019720 412 GVRRA 416
**996 PP
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| 2 | Auxin_resp | 117.9 | 8.1e-39 | 441 | 523 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83
a+ha+ t+++F+v+Y+Pr+s++eF+v++++++++lk+++++GmRfkm+fe+e+++e+r++Gt+vg++d+d+ rWp+SkWr+Lk
Ahy019720 441 AWHAILTGTIFTVYYKPRTSPAEFIVPYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDADSKRWPESKWRCLK 523
79*******************************************************************************96 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101936 | 2.09E-40 | 311 | 444 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 1.0E-40 | 312 | 430 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 1.14E-20 | 313 | 415 | No hit | No description |
| Pfam | PF02362 | 6.0E-21 | 315 | 416 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 3.7E-22 | 315 | 417 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 11.434 | 315 | 417 | IPR003340 | B3 DNA binding domain |
| Pfam | PF06507 | 2.6E-36 | 441 | 523 | IPR010525 | Auxin response factor |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0009725 | Biological Process | response to hormone | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 754 aa Download sequence Send to blast |
XWGCLDSSHQ RTENREINGP EERSRPVEMT NNISSEKTKP YSYATAVTPL LKFKSSLTIS 60 PEIRTSLALF SPPSDTLLLS PRHAPLLLPP LSLTLTISPQ NRRLPASEXL RQNLRCLPSS 120 QPEXSPPPAC SSSPPPPRSF SQLPVRYPSP PPARSWPIFI AVAEASSPIF KVNGNSHNNN 180 NINSSSELNN NVYSSSSSST SPKDAEAALY RELWHACAGP LVTVPREGER VFYFPQGHIE 240 QVEASTNQVA DQHMPVYDLP SKILCRVINV QLKAEPDTDE VFAQITLLPE QNQDESAVEK 300 EPPLPPPPRF HVHSFCKTLT ASDTSTHGGF SVLRRHADEC LPPLDMSKQP PTQELVAKDL 360 HANEWRFRHI FRGQPRRHLL QSGWSVFVSS KRLVAGDAFI FLRGENGELR VGVRRAMRQQ 420 GNVPSSVISS HSMHLGVLAT AWHAILTGTI FTVYYKPRTS PAEFIVPYDQ YMESLKNNYT 480 IGMRFKMRFE GEEAPEQRFT GTIVGIEDAD SKRWPESKWR CLKVRWDETS NIPHPERVSP 540 WKIEPALAPP ALNPLSMPRA KRPRSNVPNV PIQSSQDSSV LTREASSKVS ADPSPANGFP 600 RVLQGQEFST LRGNFAESNE SDTAEKSVVW PPVDDEKVDV VSMSRRYGSE NWMSMGRHDT 660 SYSDLLSGFG ASGDPSHPSL GDQMGGPVAY SARKHVLDHE GKLNVHHPWP AMSSGFSLNL 720 LEPSTKESPR GSETPYQARG NLRYGPFSEY PVIX |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 4ldv_A | 0.0 | 208 | 545 | 18 | 354 | Auxin response factor 1 |
| 4ldw_A | 0.0 | 208 | 545 | 18 | 354 | Auxin response factor 1 |
| 4ldw_B | 0.0 | 208 | 545 | 18 | 354 | Auxin response factor 1 |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952, ECO:0000269|PubMed:16339187}. | |||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_025616031.1 | 0.0 | auxin response factor 2B | ||||
| Swissprot | Q94JM3 | 0.0 | ARFB_ARATH; Auxin response factor 2 | ||||
| TrEMBL | A0A445C1V1 | 0.0 | A0A445C1V1_ARAHY; Auxin response factor | ||||
| STRING | GLYMA06G17320.1 | 0.0 | (Glycine max) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G62000.3 | 0.0 | auxin response factor 2 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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