PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy019848

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C2H2

Protein Properties

Length: 279aa MW: 32268.1 Da PI: 8.9172

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S59551629	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.3	3.2e-06	13	37	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ dC s++rk++L+rH+ H Ahy019848 13 YVCTvdDCQASYRRKDHLTRHLLQH 37 99*******************9887 PP
2	zf-C2H2	11.5	0.00092	42	67	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kCp +C+ Fs k n+ rH + H Ahy019848 42 FKCPmeNCNLIFSIKGNMARHVKEiH 67 89********************9988 PP
3	zf-C2H2	20.3	1.5e-06	81	105	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++Cp Cgk+F+ s L++H +H Ahy019848 81 FVCPetGCGKVFKFASKLRKHADSH 105 89*******************9888 PP
4	zf-C2H2	15.2	6e-05	171	196	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kC+ C+ Fs+ksnL++H + H Ahy019848 171 FKCEfkGCSCKFSSKSNLVTHKKAvH 196 89*******************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.9E-11	8	39	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.23E-7	8	39	No hit	No description
PROSITE profile	PS50157	10.097	13	42	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0024	13	37	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	15	37	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.82E-6	40	68	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.4E-4	40	68	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0086	42	67	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.162	42	72	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	44	67	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.09E-5	74	106	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.9E-8	79	105	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.658	81	110	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0047	81	105	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	83	105	IPR007087	Zinc finger, C2H2
SMART	SM00355	4.3	113	138	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	9.2E-4	113	134	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	115	138	IPR007087	Zinc finger, C2H2
SMART	SM00355	120	141	162	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	1.04E-8	152	206	No hit	No description
SMART	SM00355	0.003	171	196	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	13.256	171	201	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	9.7E-6	171	198	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	173	196	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.2E-5	199	225	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	7.1	202	228	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	204	228	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MPQSRFIQDE RPYVCTVDDC QASYRRKDHL TRHLLQHEGK TFKCPMENCN LIFSIKGNMA 60 RHVKEIHDEG STSTNVESKQ FVCPETGCGK VFKFASKLRK HADSHVKLQS VDVVCLEPGC 120 MKHFTNNQCL KEHIESCHQY VTCDTCGSRQ LKKNIKRHLC THEADKSLAE FKCEFKGCSC 180 KFSSKSNLVT HKKAVHFKEK PFVCGFPDCG LRFAYKHVRD KHEKTGKHVF THGDFEEADE 240 QFRSRPRGGR KRVCPTVEML VRKRVTPPSQ LENLLFMQE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2i13_A	1e-13	1	225	10	183	Aart
2i13_B	1e-13	1	225	10	183	Aart
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Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269\|PubMed:12711688, ECO:0000269\|PubMed:22353599}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016184023.1	0.0	transcription factor IIIA isoform X1
Refseq	XP_016184024.1	0.0	transcription factor IIIA isoform X1
Refseq	XP_025633852.1	0.0	transcription factor IIIA isoform X1
Swissprot	Q84MZ4	1e-108	TF3A_ARATH; Transcription factor IIIA
TrEMBL	A0A445EWZ0	0.0	A0A445EWZ0_ARAHY; Uncharacterized protein
STRING	XP_007142319.1	1e-150	(Phaseolus vulgaris)