PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy020113
Organism
Arachis hypogaea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 295aa    MW: 31489.7 Da    PI: 9.8943
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S58463588PU_refUnigeneView CDS
PUT-171a-Arachis_hypogaea-3061PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.61e-08110135227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                kt+lC+ +  +  Ck+Gd+C+FaHg+
  Ahy020113 110 KTRLCNKYNSSEGCKFGDKCHFAHGE 135
                8***********************96 PP
2zf-CCCH32.11.9e-10262286126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                +kt++C  f++ G C +G++C+FaHg
  Ahy020113 262 FKTKICEKFSK-GSCTFGEKCHFAHG 286
                69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.6764270IPR000571Zinc finger, CCCH-type
SMARTSM003562.44269IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.1E-54368IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-74467IPR000571Zinc finger, CCCH-type
PfamPF146081.85067No hitNo description
SuperFamilySSF902292.49E-8106138IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-14106138IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.507108136IPR000571Zinc finger, CCCH-type
SMARTSM003560.0016108135IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-6110135IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.78E-14163241IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.102.4E-15169240IPR004088K Homology domain, type 1
SMARTSM003226.5E-10169239IPR004087K Homology domain
PROSITE profilePS5008413.733170234IPR004088K Homology domain, type 1
PfamPF000134.9E-10172235IPR004088K Homology domain, type 1
CDDcd001057.91E-12174235No hitNo description
Gene3DG3DSA:4.10.1000.101.3E-15259292IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.549261288IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-8261291IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-6261287IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-8262286IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
GARMDRKRGR HEHPFNGTGN GASKKFRPPS ASEMESFPTG LGSKLKPCTK FFSTSGCPFG  60
EGCHFLHYVP GGIKTVQMMN AGSNPALPQV SRTPPVPPSF PDGSSPPMVK TRLCNKYNSS  120
EGCKFGDKCH FAHGEWEIGK PTMPSYEDRQ RIGGRVETPA HGAAAGFGAS ATAKISINAS  180
LAGAVIGKNG INSKQICRVT GAKLSIREHD SDPNLKNIEL EGSFDQIKQA SSMVHELILN  240
VSSAAGPAKK NVTSYGPGSN NFKTKICEKF SKGSCTFGEK CHFAHGIEEL RKSGM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016175684.10.0zinc finger CCCH domain-containing protein 44
RefseqXP_025680055.10.0zinc finger CCCH domain-containing protein 44
SwissprotQ7F8R01e-103C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A444XUN60.0A0A444XUN6_ARAHY; Uncharacterized protein
STRINGXP_004497409.11e-157(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.16e-74C3H family protein