PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy020256

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C3H

Protein Properties

Length: 373aa MW: 41280.1 Da PI: 7.6419

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S58474504	PU_ref	Unigene	View CDS
PUT-171a-Arachis_hypogaea-5202	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.2	1.2e-07	134	154	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G Ck Gd+C +aHg Ahy020256 134 ACPDFRK-GNCKKGDSCEYAHG 154 7****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	5.1E-6	129	155	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.995	130	156	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.8E-6	134	154	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.4E-5	134	156	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	14	164	187	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.643	164	188	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MMLGEHHRAN PTVHVPPWPI LDDQTADMYS PYSVTEGNAG AGDYSPYYLQ EALSALQRYL 60 PSNDAAGDGG DSDGEAQADA PVDAYSCDQF RMYEFKVRRC ARGRSHDWTE CPYAHPGEKA 120 RRRDPRKFHY SGTACPDFRK GNCKKGDSCE YAHGVFECWL HPARYRTQPC KDGTSCRRRV 180 CFFAHTPEQL RVLPQQSPRS VDSYDGSPLR QVSMPFVSSP TSVSPPVSSP VDSPPMSPMM 240 RSLGSSNMSD MVVAQLRNLQ LGKVKSMPNS NRNVTVGSPG FGSPRGSVIR PGFCSLPTTP 300 TQAPVRFGSN CFELWEQSFE EEPVMERVES GRDIRAKMFE KLSKENSLDR SGSGSGRQSG 360 GVPDLGWVSE LVK

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MMLGEHHRAN PTVHVPPWPI LDDQTADMYS PYSVTEGNAG AGDYSPYYLQ EALSALQRYL  60
PSNDAAGDGG DSDGEAQADA PVDAYSCDQF RMYEFKVRRC ARGRSHDWTE CPYAHPGEKA  120
RRRDPRKFHY SGTACPDFRK GNCKKGDSCE YAHGVFECWL HPARYRTQPC KDGTSCRRRV  180
CFFAHTPEQL RVLPQQSPRS VDSYDGSPLR QVSMPFVSSP TSVSPPVSSP VDSPPMSPMM  240
RSLGSSNMSD MVVAQLRNLQ LGKVKSMPNS NRNVTVGSPG FGSPRGSVIR PGFCSLPTTP  300
TQAPVRFGSN CFELWEQSFE EEPVMERVES GRDIRAKMFE KLSKENSLDR SGSGSGRQSG  360
GVPDLGWVSE LVK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025700825.1	0.0	zinc finger CCCH domain-containing protein 20
Swissprot	Q9M0G2	1e-141	C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBL	A0A444YZG7	0.0	A0A444YZG7_ARAHY; Uncharacterized protein
STRING	XP_004513076.1	0.0	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	1e-134	C3H family protein

Publications ? help Back to Top
Dokládal L, et al. cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase. Front Plant Sci, 2015. 6: p. 985 [PMID:26617625] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]