PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy020628
Organism
Arachis hypogaea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family YABBY
Protein Properties Length: 186aa    MW: 20869.6 Da    PI: 8.5005
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S58458384PU_refUnigeneView CDS
PUT-171a-Arachis_hypogaea-17569PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY224.82.3e-6951636170
      YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsene 105
                 +e+vCyv CnfCnt lavsvP +sl+++vtvrC hC++llsvn+  + q+l+ ++  +++   +++++l +++ + k+  ++++  + ++ s  ++  +
  Ahy020628   5 GTERVCYVYCNFCNTTLAVSVPCSSLLTIVTVRCEHCANLLSVNMGASLQTLPPQDPHHHQ---SQKQHLSFQDPSSKELGSSSS--RCNKLSAAFDPVD 99 
                589**************************************************99973333...344444454444444433333..3333333445556 PP

      YABBY 106 deevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                ++  pr+pp irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl
  Ahy020628 100 HDPQPRIPP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 163
                666788888.9****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.7E-726163IPR006780YABBY protein
SuperFamilySSF470951.96E-8108156IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.7E-5111157IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MDMMGTERVC YVYCNFCNTT LAVSVPCSSL LTIVTVRCEH CANLLSVNMG ASLQTLPPQD  60
PHHHQSQKQH LSFQDPSSKE LGSSSSRCNK LSAAFDPVDH DPQPRIPPIR PPEKRQRVPS  120
AYNRFIKEEI QRIKASNPDI SHREAFSTAA KNWAHFPHIH FGLKLDGNKQ AKLDQGEGTQ  180
KSNGFY
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016171233.11e-138putative axial regulator YABBY 2
RefseqXP_025673011.11e-138putative axial regulator YABBY 2 isoform X1
SwissprotQ9XFB01e-76YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLA0A445BX721e-136A0A445BX72_ARAHY; Uncharacterized protein
STRINGGLYMA12G10210.31e-104(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.13e-65YABBY family protein
Publications ? help Back to Top
  1. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]