PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy020794
Organism
Arachis hypogaea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 109aa    MW: 12421.1 Da    PI: 9.6199
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S54104669PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.1e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+++Ed  l+++ + +G+g +W + +r+ g++R++k+c++rw++yl
        Ahy020794 14 RGPWSPDEDATLKNYLHTHGTGgNWIALPRKAGLRRCGKSCRLRWLNYL 62
                     89**********************************************7 PP
2Myb_DNA-binding45.81.4e-1469109244
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      g +T++Ed+++  + +q+G++ W++Ia+ ++ gRt++++k++w
        Ahy020794  69 GGFTEQEDQIICTLYTQMGSR-WSAIASQLP-GRTDNDVKNYW 109
                      569******************.*********.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.41962IPR017930Myb domain
SuperFamilySSF466891.12E-2711109IPR009057Homeodomain-like
SMARTSM007178.1E-111364IPR001005SANT/Myb domain
PfamPF002493.8E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-241569IPR009057Homeodomain-like
CDDcd001676.03E-81662No hitNo description
PROSITE profilePS5129419.90263109IPR017930Myb domain
SMARTSM007172.6E-567109IPR001005SANT/Myb domain
PfamPF002495.2E-1269109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-2170109IPR009057Homeodomain-like
CDDcd001673.91E-971109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPD EDATLKNYLH THGTGGNWIA LPRKAGLRRC GKSCRLRWLN  60
YLRPDIKHGG FTEQEDQIIC TLYTQMGSRW SAIASQLPGR TDNDVKNYW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-22141097100B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015945113.12e-79transcription factor RAX2-like
SwissprotQ9M2Y91e-64RAX3_ARATH; Transcription factor RAX3
TrEMBLA0A445GAQ12e-72A0A445GAQ1_GLYSO; Transcription factor RAX3
TrEMBLK7MNI72e-72K7MNI7_SOYBN; Uncharacterized protein
STRINGGLYMA17G35020.23e-73(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.12e-67myb domain protein 68
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  3. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]