PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy020800
Organism
Arachis hypogaea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 256aa    MW: 28364.7 Da    PI: 4.8222
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S59541643PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.26.7e-125091446
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     W ++++ ll+++++++G g+W+ +a+++g ++  ++c++++++
        Ahy020800 50 WNADDEILLLEGIEMYGLGNWAEVAEHVG-TKNKESCIEHYRN 91
                     *****************************.***********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd023356.98E-19138No hitNo description
PROSITE profilePS501358.888133IPR000433Zinc finger, ZZ-type
SuperFamilySSF578504.94E-11352No hitNo description
PfamPF005692.5E-6330IPR000433Zinc finger, ZZ-type
SuperFamilySSF466891.48E-124396IPR009057Homeodomain-like
PROSITE profilePS5129321.9244597IPR017884SANT domain
SMARTSM007171.1E-104695IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.6E-84992IPR009057Homeodomain-like
CDDcd001671.39E-125092No hitNo description
PfamPF002491.9E-115091IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
GKIRIKCAMC PDFDLCIECF SVGAEVTPHK SSHPYRVMDN LSFPLICADW NADDEILLLE  60
GIEMYGLGNW AEVAEHVGTK NKESCIEHYR NIYLNSPFFP LPDMSHVVGK NKKELLAMAK  120
GQGEDKKGIS MADGLKEEST FSPSRVKVED SHKAGSSGPN QKASNSARGK DGLGVVKLED  180
SQVDRNFGGK KPNSSGNEGP SLVESSGLVI IQKDXEFDPE YDNDAEQLLA EMEFKDADTD  240
DEREIKLRVL RIYAKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw3_E4e-35210517120Transcriptional adapter 2
6cw3_G4e-35210517120Transcriptional adapter 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016197560.11e-180transcriptional adapter ADA2b isoform X2
RefseqXP_025694061.11e-180transcriptional adapter ADA2b
SwissprotQ75LL61e-122TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBLA0A444ZD411e-179A0A444ZD41_ARAHY; Transcriptional adapter
TrEMBLA0A445DJA01e-179A0A445DJA0_ARAHY; Transcriptional adapter
STRINGGLYMA09G01501.11e-157(Glycine max)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]