PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy020947

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C2H2

Protein Properties

Length: 190aa MW: 21405.8 Da PI: 8.9686

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S59522260	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	0.00011	30	52	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ Ahy020947 30 WKCDKCSKRYAVQSDWKAHSKTC 52 58*****************9998 PP
2	zf-C2H2	11.4	0.001	60	78	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg+ Fsr++++ +H + Ahy020947 60 DCGTIFSRRDSFITHRAFC 78 8**************8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	6.5E-5	18	51	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.53E-5	25	74	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
XCVHNHPSRA LGDLTGIKKH FCRKHGEKKW KCDKCSKRYA VQSDWKAHSK TCGTREYKCD 60 CGTIFSRRDS FITHRAFCDA LAEETARVNA ASTINHTLLG ANNIAYTLMQ QQNHHPLVPN 120 NMSTHFSSIF KPISSSTTDE ISSNSQTSSR PLSLWNMGHH PHDTTTIMPI THNNLHDIHQ 180 QIGFATNPPP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	4e-38	26	95	3	72	Zinc finger protein JACKDAW
5b3h_F	4e-38	26	95	3	72	Zinc finger protein JACKDAW
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016172121.1	1e-139	zinc finger protein NUTCRACKER
TrEMBL	A0A444Y685	1e-137	A0A444Y685_ARAHY; Uncharacterized protein
STRING	XP_004487192.1	3e-75	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.2	2e-60	C2H2 family protein