PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy021675
Organism
Arachis hypogaea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family Whirly
Protein Properties Length: 255aa    MW: 28003.8 Da    PI: 9.6965
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S58474103PU_refUnigeneView CDS
PUT-171a-Arachis_hypogaea-15847PU_unrefplantGDBView CDS
PUT-171a-Arachis_hypogaea-15848PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly196.92.8e-61802161137
     Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlp 100
                svyk+kaa+++ + +ptf++ldsg+++++r+G++++ ++ +++erkydWe+kq+falsatev++l+++++++sceffhdp++ +sn+G+vrk+l+++P++
  Ahy021675  80 SVYKGKAAFSLSPCLPTFTKLDSGAVVVDRRGSMMMIFMHSIGERKYDWENKQRFALSATEVGSLISMGPQDSCEFFHDPSMLSSNAGQVRKSLSIKPHA 179
                79************************************************************************************************** PP

     Whirly 101 dGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                   G+fv+l+v n+l+++++++svPv+ aefav++++
  Ahy021675 180 SSNGYFVSLTVVNNLLNTKDYLSVPVTTAEFAVMKTA 216
                ***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.104.5E-7468233IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544471.8E-6472233IPR009044ssDNA-binding transcriptional regulator
PfamPF085367.4E-5881215IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
XGGREEGEKR GKVGESQKML KLSRLLPSIS GSSPRLLEPL SFTKPDPRDC LRHSAAFSTA  60
TNNKYAAKGY TSNRIFAPYS VYKGKAAFSL SPCLPTFTKL DSGAVVVDRR GSMMMIFMHS  120
IGERKYDWEN KQRFALSATE VGSLISMGPQ DSCEFFHDPS MLSSNAGQVR KSLSIKPHAS  180
SNGYFVSLTV VNNLLNTKDY LSVPVTTAEF AVMKTACSFA LPHIMGWDRM THQSGGTVGL  240
QSKVEPPALD LEWDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A1e-85722318167Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B1e-85722318167Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C1e-85722318167Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D1e-85722318167Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016205321.11e-178single-stranded DNA-bindig protein WHY2, mitochondrial isoform X1
RefseqXP_025662814.11e-178single-stranded DNA-binding protein WHY2, mitochondrial isoform X1
SwissprotD9J0349e-92WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A444YKS31e-176A0A444YKS3_ARAHY; Uncharacterized protein
STRINGXP_007147230.11e-129(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.12e-90WHIRLY 2