PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy022067
Organism
Arachis hypogaea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MIKC_MADS
Protein Properties Length: 237aa    MW: 27432.7 Da    PI: 9.0432
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S54134850PU_unrefUnigeneView CDS
gnl|UG|Ahy#S58441987PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.81.4e-28251251
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               rienk+nrqvtfskRr+g+ KKA+E+SvLCdaeva+iifs++gkl+ +ss
  Ahy022067  2 RIENKINRQVTFSKRRAGLVKKANEISVLCDAEVALIIFSTKGKLFQFSS 51
               8***********************************************96 PP
2K-box104.99.7e-3575166899
      K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                ++++  +++++ e+akLk+++e Lqr+qRh++GedL+ Ls++eLq+LeqqL+++lk+iRs+Kn++++e+i+ lqkkek+l+e+n++L kk++
  Ahy022067  75 ANAQGPNANWTLEHAKLKARVEVLQRNQRHFMGEDLQGLSMRELQNLEQQLDSALKQIRSRKNQIMYENISLLQKKEKALNEQNNSLAKKIK 166
                455566789*********************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.2E-28152IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.941153IPR002100Transcription factor, MADS-box
PfamPF003194.2E-25249IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-29277IPR002100Transcription factor, MADS-box
CDDcd002658.76E-36271No hitNo description
PRINTSPR004042.5E-161530IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-163051IPR002100Transcription factor, MADS-box
PROSITE profilePS5129716.4181171IPR002487Transcription factor, K-box
PfamPF014863.9E-2981165IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
XRIENKINRQ VTFSKRRAGL VKKANEISVL CDAEVALIIF STKGKLFQFS SDSCMERIIE  60
RYERYSYAER QQLVANAQGP NANWTLEHAK LKARVEVLQR NQRHFMGEDL QGLSMRELQN  120
LEQQLDSALK QIRSRKNQIM YENISLLQKK EKALNEQNNS LAKKIKGKEK ATTEQTRQLE  180
LQDNYTVAPQ TSENLNIRGM PQDRSDNEEH NDNEEGIQIN ASANILLPNW MIPPTNE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-172661073MEF2 CHIMERA
6byy_B1e-172661073MEF2 CHIMERA
6byy_C1e-172661073MEF2 CHIMERA
6byy_D1e-172661073MEF2 CHIMERA
6bz1_A1e-172661073MEF2 CHIMERA
6bz1_B1e-172661073MEF2 CHIMERA
6bz1_C1e-172661073MEF2 CHIMERA
6bz1_D1e-172661073MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016181890.11e-174truncated transcription factor CAULIFLOWER A-like
RefseqXP_025683751.11e-174truncated transcription factor CAULIFLOWER A
SwissprotQ424291e-91AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A444X7M51e-173A0A444X7M5_ARAHY; Uncharacterized protein
STRINGXP_008393256.19e-99(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.18e-91AGAMOUS-like 8
Publications ? help Back to Top
  1. Kang SG,Hannapel DJ
    Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs.
    Gene, 1995. 166(2): p. 329-30
    [PMID:8543185]