PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy022285

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

NF-YC

Protein Properties

Length: 243aa MW: 27116.4 Da PI: 7.2573

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S59521186	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	57.7	2.6e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +P l+ska elf+ +l r++ + +t+ ++ +v+ ++fdfl di + Ahy022285 6 DTRFPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCNRTYDITLRRGAKTMTALHLKHCVQTFNVFDFLKDILNK 86 5789*************************************************************************9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.24E-19	3	88	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.1E-25	3	72	IPR009072	Histone-fold
Pfam	PF00808	5.6E-18	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPLLVSKALE LFLQDLCNRT YDITLRRGAK 60 TMTALHLKHC VQTFNVFDFL KDILNKVPDL GGSGATGDDR SIPKRRKVAE GDDNDSDEEQ 120 KRNKMLEARN TSGRGRGRGR GRGRGRGQRT ADHDHEMILH VKFEDESDVL KQNGKHTHSS 180 ESPENVLEHE EVKPSLSVSR PAEACVRNID LNMAPVDEDM DSFDTQAPVP VMASSDTQAP 240 VPX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	3e-23	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	145	RGRGRGRGRGR
2	137	146	RGRGRGRGRG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015973487.1	1e-178	dr1-associated corepressor
Refseq	XP_025608839.1	1e-178	dr1-associated corepressor
TrEMBL	A0A445C454	1e-177	A0A445C454_ARAHY; Uncharacterized protein
STRING	GLYMA02G44500.2	1e-102	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	7e-62	nuclear factor Y, subunit C11