PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy022413

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

bZIP

Protein Properties

Length: 348aa MW: 37746.9 Da PI: 5.8367

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S59542941	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.4	2e-10	154	209	5	60
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l ++ l Ahy022413 154 KRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLYQRDTNGLS 209 9*****************************************99988877666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.8E-16	150	214	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.818	152	215	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.34E-10	154	205	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.2E-10	154	208	No hit	No description
Pfam	PF00170	5.6E-9	154	211	IPR004827	Basic-leucine zipper domain
CDD	cd14703	1.65E-24	155	204	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MQDPPPTPPP PNSASHLPPP APSTAATXXX XXPSPPPPMA TAELTPEVSF RLPDDMMDLS 60 PSDPFTGGSS PARSEDDLFT TYIDVDKLGN GSGGSGNGSD PIGNGTESEK AVPRPRHRHS 120 NSVDGSTTSF GEIMDAKKAM PPDKLAELWT IDPKRAKRIL ANRQSAARSK ERKARYIQEL 180 ERKVQTLQTE ATTLSAQLTL YQRDTNGLST ENTELKLRLQ AMEQQAQLRD ALNEALKKEV 240 ERLKVATGEM MSPTESFNLG MHQMPFTGAN FFPIQPQSGP SDHQNMQLPP FAHAPPGMPT 300 HQLQQSSSHP LSEIMQNHMQ GLDINSKGPT TVKSEGPSIS ASESSTTF

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MQDPPPTPPP PNSASHLPPP APSTAATXXX XXPSPPPPMA TAELTPEVSF RLPDDMMDLS  60
PSDPFTGGSS PARSEDDLFT TYIDVDKLGN GSGGSGNGSD PIGNGTESEK AVPRPRHRHS  120
NSVDGSTTSF GEIMDAKKAM PPDKLAELWT IDPKRAKRIL ANRQSAARSK ERKARYIQEL  180
ERKVQTLQTE ATTLSAQLTL YQRDTNGLST ENTELKLRLQ AMEQQAQLRD ALNEALKKEV  240
ERLKVATGEM MSPTESFNLG MHQMPFTGAN FFPIQPQSGP SDHQNMQLPP FAHAPPGMPT  300
HQLQQSSSHP LSEIMQNHMQ GLDINSKGPT TVKSEGPSIS ASESSTTF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016167043.1	0.0	transcription factor RF2b
Refseq	XP_025666847.1	0.0	transcription factor RF2b
Swissprot	Q6S4P4	4e-94	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A0A444YC13	0.0	A0A444YC13_ARAHY; Uncharacterized protein
STRING	GLYMA18G05880.2	1e-166	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-82	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]